SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene28804

Length: 969 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene28804

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative ubiquitin-conjugating enzyme E2 23 [Arabidopsis thaliana] sp\|Q9ZVX1.1\|UBC23_ARATH RecName: Full=Probable ubiquitin-conjugating enzyme E2 23; AltName: Full=Ubiquitin carrier protein 23 gb\|AAC64223.1\| putative ubiquitin-conjugating enzyme [Arabidop	-	-	0.0	55%
FL-Next	sp=Probable ubiquitin-conjugating enzyme E2 23; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	55%

Source	ECs	Term	Type	e value	Identity
Sma3	Ubiquitin--protein ligase.	EC:6.3.2.19	-	9.84e-06	-

Source	Gene names
Sma3	At2g16920; F12A24.10; GSVIVT00004685001; GSVIVT00010190001; GSVIVT00036139001; OJ1214_E03.18; Os01g0125900; Os05g0557700; OsI_00213; OsI_20940; OsJ_00211; P0037C04.36; P0044F08.17; PHYPADRAFT_130636; PHYPADRAFT_40312; POPTRDRAFT_555800; POPTRDRAFT_580906;

Source	GOs	Term	Type	Identity
Sma3	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	-
Sma3	small conjugating protein ligase activity	GO:0019787	Molecular Function	-
Sma3	modification-dependent protein catabolic process	GO:0019941	Biological Process	-
Sma3	post-translational protein modification	GO:0043687	Biological Process	-
Sma3	regulation of protein metabolic process	GO:0051246	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ubiquitin-conjugating enzyme, E2	IPR000608	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	Ubiquitin-conjugating enzyme/RWD-like	IPR016135	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G16920.1	UBC23, PFU2 ubiquitin-conjugating enzyme 23 chr2:7334559-7338827 REVERSE LENGTH=1102	55%
RefSeq	Arabidopsis thaliana	NP_179284.1	putative ubiquitin-conjugating enzyme E2 23 [Arabidopsis thaliana]	55%
RefSeq	Populus trichocarpa	XP_002313703.1	predicted protein [Populus trichocarpa]	54%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9ZVX1

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 634 aas, your sequence is shorter than subject: 266 - 1102

Fln protein: HGDIVAAVSDPKGQIGTVVNVEILVDLKSATEEIKQNVSSRKLRPIRAFAEGDYVLHGPWLGRVVEVVDNVTVLFDDGSKCKIMRADPERLMPVSRSLLGDTDYDYYPGQRVRGSSSVVFKNARWLRGTWKASRMEGTISNVEVGSVYVYWIVAANPGPNSKSTTIPADMQDPKELKLLSCFSYANWQLGDWCLLPTSERRIFGSTATVKQDTAPDRNTETLVRNHTLPASDSGVPTISESVGNDTVSNLDSCIPVLFRLKTFDA*

Protein Length: 267

Fln nts: GCATGGTGACATTGTTGCAGCTGTTTCAGATCCGAAAGGGCAGATAGGCACAGTAGTTAATGTTGAAATTTTGGTAGATCTGAAGTCAGCTACCGAAGAAATTAAACAAAATGTCTCCAGCAGGAAACTAAGACCGATAAGGGCCTTTGCAGAGGGTGATTACGTGCTTCATGGACCTTGGCTGGGTAGAGTGGTTGAGGTTGTGGATAATGTGACAGTTTTGTTTGATGATGGTTCAAAGTGTAAAATAATGAGGGCTGATCCAGAACGCCTCATGCCTGTTTCCAGGAGCCTTTTGGGAGATACAGATTATGATTACTATCCAGGTCAGCGTGTACGAGGTAGTTCTTCAGTGGTTTTCAAGAATGCTAGATGGTTGCGAGGTACATGGAAGGCGAGTCGCATGGAAGGCACAATAAGTAATGTGGAGGTGGGATCAGTATATGTTTACTGGATCGTTGCAGCAAATCCTGGCCCTAATTCGAAGTCAACAACCATCCCTGCAGATATGCAGGATCCTAAAGAGTTGAAGCTCTTGTCTTGTTTTTCATATGCAAATTGGCAACTAGGTGATTGGTGTCTCCTTCCCACATCTGAAAGGAGAATCTTCGGCTCAACTGCCACTGTCAAGCAAGATACAGCACCAGATAGAAACACAGAAACACTTGTAAGGAATCACACTTTGCCTGCTTCAGATTCTGGTGTCCCTACAATTTCGGAATCAGTTGGGAATGACACTGTATCCAATTTGGATTCTTGTATTCCTGTCTTGTTCAGGCTCAAAACCTTCGATGCCTGACAACTGGGTTTTACACCGCAAGAAATATCGTAAACGCAGAGTCAGGCGAGATAAGAAAGTTCACAAAAAAGAAGACATTCTTGAACGGGCACTTGTTGTTGTGAACACTAAGACTAAGGTTGATATACTTTGGCAAGATGGCACAACATCCTTTGGAATAGATTCCAAGG

Fln Alignment:

Contig28804___HGDIVAAVSDPKGQIGTVVNVEILVDLKSATEEIKQNVSSRKLRPIRAFAEGDYVLHGPWLGRVVEVVDNVTVLFDDGSKCKIMRADPERLMPVSR-SLLGDTDYDYYPGQRVRGSSSVVFKNARWLRGTWKASRMEGTISNVEVGSVYVYWIVAANPGPNSKSTTIPADMQDPKELKLLSCFSYANWQLGDWCLLPT
Q9ZVX1_______________HGDYVASASEPTGQVGVVVDVNISVDLLAPDGSIHKDISTKNLKRVRDFAVGDYVVHGPWLGRIDDVLDNVTVLFDDGSMCKVLRVEPLRLKPIPKNNLEEDANFPYYPGQRVKASSSSVFKNSRWLSGLWKPNRLEGTVTKVTAGSIFVYWIASAGFGPD--SSVSPPEEQNPSNLTLLSCFTHANWQVGDWCLLPS

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
567	11			88	0.923564
569			88	11	0.923564
794			85	14	0.993533
795		80		20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain