SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene28796

Length: 2642 nt

UniGene Fasta

>sp_v3.0_unigene28796
AATGAATGCCTCTGCAGCAGACATGACATTTACTCGTGATTACGGGATTTAATGGCAAGAATTTTGATCTAAATTAAGCAGAATATTGAAACCTGTGGGAAATGTCGTTGGGGAGTCCCGGATTTGAGTTCAGACAAATTTATGGCAACTCTGGTTTTCAGCGATGCAGGGCCTGCTAAGAGTATTGTTTCCATAGAGGAAGGATTCAGCCTGAAATGCTCTGTGGATTCCATTAGAATGCCAGAGGAGGAGAAGACTACAGCAATCAGTGGATTGGACTGTTGCGGGTTGTTGCAGGAGATGGTGTGTAGAAACCAGGTCTTGGGCCCAGATGAGAAGGAGGAGAAGAATGGAGGGTGTGAAATCAGGTGTGAATTCAGTGGGTCAGAGGGGAAGAGTTGGCAATCGGTATTTGATATAGCTGAGCCTCTGATTGAGCAGGACTTGGCTTCTGAAGCTTGCAGGTACTGTGTGAGCTTTTGTTTGTTTGGGTTTATTGCGATATTTATGGTCCATTATCTGTTTTTGGGTGCGCTGGAGCTCAAAGGGACCGTGGATGAGGAAAGTCTGTGTGTCAGAGCAGGATTGAGTTCTAAAGCCCTGCGTATAATGGGTGGTGCTGTGGTGGTTTCTTTGCGTACATGACCTTGCCTGGCACTCATTTCGAAGCACAGGAAGAGATGTTCATGTTGGCAAGATATTGAGCTGAGTCGAACCAGGGCAGATGATGCAGACGAGAGAGCTGAGAAAGCCCAATGCTCTAAACAACAATTCATGACCTATGTGTTTCACAATATAAGAGTTCCCTTCAATGCAATAGTTCTTGGATTGGGATACCTGAGAGCTATTGGAGATGTGGAAACGTCCTCGGCTGAGGTCAATGAGAAGAAGGATCTAGTGAAGTTGATGCTGGATTGCGCTGAGACCATGACCAACGTGCTTGATGATGTTACAGATTTAGGGCAAGGGGAAGATGGGTCATTACAGCTCCATATGGAAGATTTTGATTTACTGCAAGTTGTGAAATTTTTAGTATGGGGTTTGAAGGATCTCTTATTCCACAGTAAAATCTCTTTTAAGATGAATATTGAACCTACCGTTGAGAACCTTCTCATGACATACCGCGTAATTGGGGATAAGCACAGGGTTGTTCAAACATTAGGAATCTTTCTAAGCAATGCTGTGAAATTTACTCCATCTGGGGGAAGGCTAGAGCTTGAAGTAAACTGTGAAGAGATTATAGAGATTGCAGCAGCTGATTTATGGCAGCAGTCACGTTTTCAACCAGCAGTGCCATCCCAGAATTTGCAGCACTCTCTGATGTTGCCTAATAATGGTGTTGGCATGAAACATAAAGTTGCTAAAATTGTGCTTTCTGTGAATGACTTCGCAACAGGAATCTCTTCGCAGGATCAGTCAAAGTGGTTTGAGCCATACTCATTGACAACAGGACAGGACCCAAACCATGCATATTCTGGTTTAGGATTGAGCATGGCAAAGCGTTTTGTTGAACAAGTGGGTGGTTTTATTGGAGTAAAGTCTATAAATGGCAAGGATAGCACTTTTTGTTTGTTGATTCCGTATCCTCTGGTACTGGTTCATAGTTGTGGAGGAACAAATGCTGCAGTAGATGTTTATAAAATCAATACAACAGATTGCAGATCAGCATGCAATTTCCAGGATGAACTCAGCAGTTCATCTCAGATAGAGTCCAGAGTTCATAGTGTTCGAACCATCAAGTCAAAGAGTCCCCTCTCGCAGGATCCTAGCTCCCGCAGACGAGTTTTGCTTGTTGAAGATACATTAATCAATAGAATAATTTTGCGGAAAGTGCTTGAAAACCTCAACCTTCACTGTGAAGAAGCTGAAAATGGAAAGGTAGCGGTGGATTTCTTCAAGCAGGGCAGAACTTATGATCTTGTGTTAATGGACAAAGAAATGCCTGTCATGGATGGACATGAGGCTACAAGACAATTGAGATCCATGGGAGTTAAGACACCAATTATTGCACTCACTGGAAATGCTTTGCAATCTGATAAAGACCTCTTCTTTGAGGCTGGTGTGGATGATTTTCAGACAAAGCCTCTATCTAGAGACAAACTTGTTCAATTACTAGCTCGTTATGGCGTTGAGAGCTGTGCTGGCAACAGAAGGGGTTGAAAAGGTCATGCAACTTCATTGTATTATACTCGTGTCCTTGCAGAAAAAGGCATAGTAAGCCAAATAACAGCAGGACAATGAGTTTTCAGCTTTTTAGTGGAGCCATTTCTCCATTTTGCTGAAAGTGCTTCCAATTTCTGGAACCTTTTTGCAGTGTATAGGCTTGGGCAGAGTCCAGATAATGTAATTATATTTACTTACAGTTTTGTAGACAGTGCTTGATAATGGTCTGTGGTAAAATATTTTTTGGGAAAAAGAGCCCCTGAATTTTCTCAGGAATGCTCATGCAAAGTTCCTGCAAACTCCGACATAGGTGGCATGCACAATTTGCATCCCAGTATGACAAAAATTGAAGCTCAATAGATCATATGTTACCGATTTTTTCATTCAGGCAACCAGCAAATTCACCATGTTTATTCAAAATATGTTTTTGGATCTTCTTGCAGTTGGGAGTGGATGAACGAGTACTTCTGTTTTCACTG

Ace file of the UniGene sp_v3.0_unigene28796

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Hpt sensor hybrid histidine kinase [Halorhodospira halophila SL1] gb\|ABM62915.1\| Hpt sensor hybrid histidine kinase [Halorhodospira halophila SL1]	-	-	5.0e-35	27%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	82%
Sma3	Predicted protein	-	-	0.0	-

Source	Gene names
Sma3	PHYPADRAFT_38595;

Source	GOs	Term	Type	Identity
Sma3	two-component response regulator activity	GO:0000156	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	two-component signal transduction system (phosphorelay)	GO:0000160	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Signal transduction response regulator, receiver domain	IPR001789	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AC19

Fln msg: your sequence is longer than subject: 462 - 252

Fln protein: MTYVFHNIRVPFNAIVLGLGYLRAIGDVETSSAEVNEKKDLVKLMLDCAETMTNVLDDVTDLGQGEDGSLQLHMEDFDLLQVVKFLVWGLKDLLFHSKISFKMNIEPTVENLLMTYRVIGDKHRVVQTLGIFLSNAVKFTPSGGRLELEVNCEEIIEIAAADLWQQSRFQPAVPSQNLQHSLMLPNNGVGMKHKVAKIVLSVNDFATGISSQDQSKWFEPYSLTTGQDPNHAYSGLGLSMAKRFVEQVGGFIGVKSINGKDSTFCLLIPYPLVLVHSCGGTNAAVDVYKINTTDCRSACNFQDELSSSSQIESRVHSVRTIKSKSPLSQDPSSRRRVLLVEDTLINRIILRKVLENLNLHCEEAENGKVAVDFFKQGRTYDLVLMDKEMPVMDGHEATRQLRSMGVKTPIIALTGNALQSDKDLFFEAGVDDFQTKPLSRDKLVQLLARYGVESCAGNRRG*

Protein Length: 463

Fln nts: AATGAATGCCTCTGCAGCAGACATGACATTTACTCGTGATTACGGGATTTAATGGCAAGAATTTTGATCTAAATTAAGCAGAATATTGAAACCTGTGGGAAATGTCGTTGGGGAGTCCCGGATTTGAGTTCAGACAAATTTATGGCAACTCTGGTTTTCAGCGATGCAGGGCCTGCTAAGAGTATTGTTTCCATAGAGGAAGGATTCAGCCTGAAATGCTCTGTGGATTCCATTAGAATGCCAGAGGAGGAGAAGACTACAGCAATCAGTGGATTGGACTGTTGCGGGTTGTTGCAGGAGATGGTGTGTAGAAACCAGGTCTTGGGCCCAGATGAGAAGGAGGAGAAGAATGGAGGGTGTGAAATCAGGTGTGAATTCAGTGGGTCAGAGGGGAAGAGTTGGCAATCGGTATTTGATATAGCTGAGCCTCTGATTGAGCAGGACTTGGCTTCTGAAGCTTGCAGGTACTGTGTGAGCTTTTGTTTGTTTGGGTTTATTGCGATATTTATGGTCCATTATCTGTTTTTGGGTGCGCTGGAGCTCAAAGGGACCGTGGATGAGGAAAGTCTGTGTGTCAGAGCAGGATTGAGTTCTAAAGCCCTGCGTATAATGGGTGGTGCTGTGGTGGTTTCTTTGCGTACATGACCTTGCCTGGCACTCATTTCGAAGCACAGGAAGAGATGTTCATGTTGGCAAGATATTGAGCTGAGTCGAACCAGGGCAGATGATGCAGACGAGAGAGCTGAGAAAGCCCAATGCTCTAAACAACAATTC_-_ATGACCTATGTGTTTCACAATATAAGAGTTCCCTTCAATGCAATAGTTCTTGGATTGGGATACCTGAGAGCTATTGGAGATGTGGAAACGTCCTCGGCTGAGGTCAATGAGAAGAAGGATCTAGTGAAGTTGATGCTGGATTGCGCTGAGACCATGACCAACGTGCTTGATGATGTTACAGATTTAGGGCAAGGGGAAGATGGGTCATTACAGCTCCATATGGAAGATTTTGATTTACTGCAAGTTGTGAAATTTTTAGTATGGGGTTTGAAGGATCTCTTATTCCACAGTAAAATCTCTTTTAAGATGAATATTGAACCTACCGTTGAGAACCTTCTCATGACATACCGCGTAATTGGGGATAAGCACAGGGTTGTTCAAACATTAGGAATCTTTCTAAGCAATGCTGTGAAATTTACTCCATCTGGGGGAAGGCTAGAGCTTGAAGTAAACTGTGAAGAGATTATAGAGATTGCAGCAGCTGATTTATGGCAGCAGTCACGTTTTCAACCAGCAGTGCCATCCCAGAATTTGCAGCACTCTCTGATGTTGCCTAATAATGGTGTTGGCATGAAACATAAAGTTGCTAAAATTGTGCTTTCTGTGAATGACTTCGCAACAGGAATCTCTTCGCAGGATCAGTCAAAGTGGTTTGAGCCATACTCATTGACAACAGGACAGGACCCAAACCATGCATATTCTGGTTTAGGATTGAGCATGGCAAAGCGTTTTGTTGAACAAGTGGGTGGTTTTATTGGAGTAAAGTCTATAAATGGCAAGGATAGCACTTTTTGTTTGTTGATTCCGTATCCTCTGGTACTGGTTCATAGTTGTGGAGGAACAAATGCTGCAGTAGATGTTTATAAAATCAATACAACAGATTGCAGATCAGCATGCAATTTCCAGGATGAACTCAGCAGTTCATCTCAGATAGAGTCCAGAGTTCATAGTGTTCGAACCATCAAGTCAAAGAGTCCCCTCTCGCAGGATCCTAGCTCCCGCAGACGAGTTTTGCTTGTTGAAGATACATTAATCAATAGAATAATTTTGCGGAAAGTGCTTGAAAACCTCAACCTTCACTGTGAAGAAGCTGAAAATGGAAAGGTAGCGGTGGATTTCTTCAAGCAGGGCAGAACTTATGATCTTGTGTTAATGGACAAAGAAATGCCTGTCATGGATGGACATGAGGCTACAAGACAATTGAGATCCATGGGAGTTAAGACACCAATTATTGCACTCACTGGAAATGCTTTGCAATCTGATAAAGACCTCTTCTTTGAGGCTGGTGTGGATGATTTTCAGACAAAGCCTCTATCTAGAGACAAACTTGTTCAATTACTAGCTCGTTATGGCGTTGAGAGCTGTGCTGGCAACAGAAGGGGTTGA___AAAGGTCATGCAACTTCATTGTATTATACTCGTGTCCTTGCAGAAAAAGGCATAGTAAGCCAAATAACAGCAGGACAATGAGTTTTCAGCTTTTTAGTGGAGCCATTTCTCCATTTTGCTGAAAGTGCTTCCAATTTCTGGAACCTTTTTGCAGTGTATAGGCTTGGGCAGAGTCCAGATAATGTAATTATATTTACTTACAGTTTTGTAGACAGTGCTTGATAATGGTCTGTGGTAAAATATTTTTTGGGAAAAAGAGCCCCTGAATTTTCTCAGGAATGCTCATGCAAAGTTCCTGCAAACTCCGACATAGGTGGCATGCACAATTTGCATCCCAGTATGACAAAAATTGAAGCTCAATAGATCATATGTTACCGATTTTTTCATTCAGGCAACCAGCAAATTCACCATGTTTATTCAAAATATGTTTTTGGATCTTCTTGCAGTTGGGAGTGGATGAACGAGTACTTCTGTTTTCACTG

Fln Alignment:

Contig28796___NTTDCRSACNFQDELSSSSQIESRVHSVRTIKSK-SPLSQDPSSR-RRVLLVEDTLINRIILRKVLENLNLHCEEAENGKVAVDFFKQGRTYDLVLMDKEMPVMDGHEATRQLRSMGVKTPIIALTGNALQSDKDLFFEAGVDDFQTKPLSRDKLVQLLARYGVESCAGNRRG
D5AC19_______________NTRDCRSACLIWDDLHTSSQIETRSHKVRTVKSKNSRMSEDSSSPPRRILLVEDTELNRIILGKVLQTLNLHCEEAENGKVAVDYFKQGRTYDLVLMDKEMPVMDGHEATRQLRSMGVKTPIVALTGNTLQSDKDLFFEAGVDDFQTKPLSKDRLVQLLARYGVEGYAGNRRG

SNPs (tot: 33)

Position	A %	C %	G %	T %	Probability
285		75		25	0.996473
408	33		66		0.997452
757	50		50		1.0
864		80	20		0.995493
883			28	71	1.0
913			88	11	0.923564
959		12		87	0.992554
1096			25	75	0.996473
1099		75	25		0.996473
1585		25	75		0.996473
1619	75		25		0.996473
1661		16		83	0.994512
1729		14		85	0.993533
1777	12	87			0.992554
1778		87		12	0.992554
1780		87	12		0.992554
1781	87		12		0.992554
1798		12		87	0.992554
1807	87		12		0.992554
1829	14			14	0.984337
1831	14		85		0.993533
1832			85	14	0.993533
1833	85			14	0.993533
2089		87	12		0.992554
2094		12		87	0.992554
2097	87		12		0.992554
2099	87	12			0.992554
2101	87			12	0.992554
2108		16		83	0.999991
2207	15		84		0.999986
2556		75	25		0.996473
2565	50			50	1.0
2580			33	66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain