SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene28699

Length: 2423 nt

UniGene Fasta

>sp_v3.0_unigene28699
TTTAAACCAGTTAGTGGACTTCTTCCCCAGCCTGAATGGACTGCATGGGACCAGACAGTAGAATACTGTGCTTTTGCATATCAGCATTATATTGTACTTGCTTCATTGCGTCCTCAGTTTCGATATCTTGGAGATGTAGCCATTGTTGCTTCTACAGGGGGTGTCTGGCATCGTCGACAACTATTTGTTGCCACACCTACTACTATTGAATGTGTATTCGTTGATGCTGGTGTCAGCCCCATTGACTTGGAAACAAAGAAGAAGAAGGAAGAAATGAAAGCAAGGGAATCACAAGCCAGGGCAGTAGCTGAACATGGGGAATTGGCACTAATTACTGTTGATAGTGCTCAACCTGTTGTTGAGGAAAGGATACCCTTGAGGTCACCAATGTTACAGGTAGTGAGGTTGGCCTCCTTCCAGCATTCTCCGTCTGTGCCTCCATTCATGAGCGTACCAAAGCAATCAAAAGTTGATGGAGAAGAAAACATAATGCCCAAAGAAATGGAAGAAAGGAGAGTAAATGAAGTGGCTGTTGCTGGAGGAGGTGTTTCTGTGGCAGTTACTCGATTTCCTCCAGAGCAGAAACGTCCTGTTGGTCCTCTTGTTGTTGTTGGTGTCAGGGATGGGGTCCTGTGGCTTGTTGACAGATATATGATTGGCCATGCAATTGCCCTTAGCCATCCTGGCATTCGCTGTCGCTGTCTTGCAGCATATGGAGATGCTGTTAGTGCTGTGAAATGGTCAACGAGACTTGGTAGAGAGCACCATGATGATTTGGCACAATTCATGCTTGGGATGGGTTATGCAACTGAAGCTCTTCATTTGCCGGGAATATCTAAAAGGTTAGAATTTGACCTTGCAATGCAGAGTAATGATCTGAAAAGAGCACTTCAATGCCTTTTAACGATGAGCAATAGCAGAAGCATTGGGCAAGATTTGAATGTCAACAAAGATTCTACTGGAATTTTAAGTTTAGCAGCAAAACAAGAATTTGTTGCCGATACTGTTCAAGGAATTGTCAAATTTGCAAAGGAATTTCTGGACCTAATTGATGCTGCAGATGCAACTGCTCAAGCTGATATTGCCAGTGAAGCTCTTAAAAGACTTGCAGCTGCAGGCTCTGTAAAGGGAGCTCTACAACTACATGAGTTGCGTGGGCTAGCACTGAGACTTGCAAATCATGGGGAGTTAACACGCTTATCGGTCCTGGTAAATAATATGATTACAGCAGGCGAGGGCCGGGAGGCGGCATTTGCAGCTGCTGTGTTGGGGGATAATACTCTGATGGAAAAGGCTTGGCAGGAGACGGGGATGTATGCAGAGGCAGTGATGCATGCCCATGCACATGGTCGGCCATCACTGAAGAATTTGCTGGAATTGTGGAACAAGTCACTACAAAAAGAAATTGAGCATACATCAACTAAACCTAGATCAACAAACTCTGCAACTGCAGATCTGGCTGGTTTGGAAAGGGAACCAACATTACAGAGCTTGAATGACGTGAAGAGGCATCCATTGATTCAAATTGTCCCTCCAGGCATGATGGCTTCATCAGTAAACATACCATCTAATCTGAAGCCCAATGCAGTGGTACAAAATGGTCAACAATCAAGCAAACCTCTGCTGTTGGAAGCACCTCCAACCACTCCTGCTGTAAGTGTGTCTACACCTCTGAGTGTGACTCCACCTGCAAGTATGGCTGCAACTACAAGTGCAAATCTACCTGTAAGTATGGCTCCAACTGCAAGTGCCAATCCACCTGTAAGTATGGCTCCAACTGCAAGTGCAAATCCACCAGTAAGTATGGCTCCAACTGCCAGTGCAGATCCACTTGTAAGTATAGATCCAATCACAAGTGCAAATCCACTTGTAAGTATAGATCCAACCGGGAGTGCAAATCCACTTGTAAGTATAGATCCAATCTTGAGTGCAAATCCACTTGTAAGTATAGATCCAATTGCAAGTGCAGACCCACCTGTAAGTCTCACACCACTAGAAAGTTCAACTCCACCTGGACTGGCAGACCTGTTGTCTCAGCTGTCTGTTTAAAGTTAACTGGTTATAGGATGCCCATTTTCTTTTTGATTAGTGTTCTATATTGCAGTACTCTGATTTATCCCAGGTTTTGTGAGGACCCACCAGTATTAAAAGTTGGCTATAATCTTTTGCCTATTGTACATTATGTATTTCTTAGAGTATTTTATTGCTCTTGGAAACCATGTGCTTTCGAGAGAAAAATGTCTCCATTGATCAGATTAGGTCATTTGTTGAATAATGATTTGTATTTGCATGTTCTTTTCATATTATTTGGATCCTGATGGAATTGATTATTTTGTACAGTAGGAAGCACAACAGGTAATGGTACTGCTATGTACTTTAGAGCATTTTTCCTTCAATGATGAAAAATTCTTCATATTCGTAAT

Ace file of the UniGene sp_v3.0_unigene28699

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Metallothio multi-domain protein	-	-	1.0e-08	27%
FL-Next	tr=Arabinogalactan-like protein; Pinus taeda (Loblolly pine).	-	-	0.0	39%

Source	Gene names
Sma3	At5g24710; GSVIVT00031893001; GSVIVT00033606001; GSVIVT00034788001; MtrDRAFT_AC149038g31v2; MtrDRAFT_AC149038g7v2; OSJNBb0006H05.10; OSJNBb0006H05.18-1; OSJNBb0032K15.29; Os01g0653800; OsI_03100; OsI_03104; OsJ_02851; OsJ_02855; PHYPADRAFT_205506; POPTRDR

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity	GO:0003871	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	methionine biosynthetic process	GO:0009086	Biological Process	-
Sma3	cellular protein metabolic process	GO:0044267	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3	Chaperonin Cpn60/TCP-1	IPR002423	-	-
Sma3	Methionine synthase, vitamin-B12 independent	IPR002629	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G24710.1	Transducin/WD40 repeat-like superfamily protein chr5:8459148-8467920 REVERSE LENGTH=1377	75%
RefSeq	Arabidopsis thaliana	NP_197859.4	transducin/WD40 domain-containing protein [Arabidopsis thaliana]	75%
RefSeq	Populus trichocarpa	XP_002309040.1	predicted protein [Populus trichocarpa]	60%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: Q41071

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 44 aas, putative chimeric sequence, No stop codon before M and low homology subject, your sequence is longer than subject: 592 - 168

Fln protein: MKARESQARAVAEHGELALITVDSAQPVVEERIPLRSPMLQVVRLASFQHSPSVPPFMSVPKQSKVDGEENIMPKEMEERRVNEVAVAGGGVSVAVTRFPPEQKRPVGPLVVVGVRDGVLWLVDRYMIGHAIALSHPGIRCRCLAAYGDAVSAVKWSTRLGREHHDDLAQFMLGMGYATEALHLPGISKRLEFDLAMQSNDLKRALQCLLTMSNSRSIGQDLNVNKDSTGILSLAAKQEFVADTVQGIVKFAKEFLDLIDAADATAQADIASEALKRLAAAGSVKGALQLHELRGLALRLANHGELTRLSVLVNNMITAGEGREAAFAAAVLGDNTLMEKAWQETGMYAEAVMHAHAHGRPSLKNLLELWNKSLQKEIEHTSTKPRSTNSATADLAGLEREPTLQSLNDVKRHPLIQIVPPGMMASSVNIPSNLKPNAVVQNGQQSSKPLLLEAPPTTPAVSVSTPLSVTPPASMAATTSANLPVSMAPTASANPPVSMAPTASANPPVSMAPTASADPLVSIDPITSANPLVSIDPTGSANPLVSIDPILSANPLVSIDPIASADPPVSLTPLESSTPPGLADLLSQLSV*

Protein Length: 593

Fln nts: TTTAAACCAGTTAGTGGACTTCTTCCCCAGCCTGAATGGACTGCATGGGACCAGACAGTAGAATACTGTGCTTTTGCATATCAGCATTATATTGTACTTGCTTCATTGCGTCCTCAGTTTCGATATCTTGGAGATGTAGCCATTGTTGCTTCTACAGGGGGTGTCTGGCATCGTCGACAACTATTTGTTGCCACACCTACTACTATTGAATGTGTATTCGTTGATGCTGGTGTCAGCCCCATTGACTTGGAAACAAAGAAGAAGAAGGAAGAA_-_ATGAAAGCAAGGGAATCACAAGCCAGGGCAGTAGCTGAACATGGGGAATTGGCACTAATTACTGTTGATAGTGCTCAACCTGTTGTTGAGGAAAGGATACCCTTGAGGTCACCAATGTTACAGGTAGTGAGGTTGGCCTCCTTCCAGCATTCTCCGTCTGTGCCTCCATTCATGAGCGTACCAAAGCAATCAAAAGTTGATGGAGAAGAAAACATAATGCCCAAAGAAATGGAAGAAAGGAGAGTAAATGAAGTGGCTGTTGCTGGAGGAGGTGTTTCTGTGGCAGTTACTCGATTTCCTCCAGAGCAGAAACGTCCTGTTGGTCCTCTTGTTGTTGTTGGTGTCAGGGATGGGGTCCTGTGGCTTGTTGACAGATATATGATTGGCCATGCAATTGCCCTTAGCCATCCTGGCATTCGCTGTCGCTGTCTTGCAGCATATGGAGATGCTGTTAGTGCTGTGAAATGGTCAACGAGACTTGGTAGAGAGCACCATGATGATTTGGCACAATTCATGCTTGGGATGGGTTATGCAACTGAAGCTCTTCATTTGCCGGGAATATCTAAAAGGTTAGAATTTGACCTTGCAATGCAGAGTAATGATCTGAAAAGAGCACTTCAATGCCTTTTAACGATGAGCAATAGCAGAAGCATTGGGCAAGATTTGAATGTCAACAAAGATTCTACTGGAATTTTAAGTTTAGCAGCAAAACAAGAATTTGTTGCCGATACTGTTCAAGGAATTGTCAAATTTGCAAAGGAATTTCTGGACCTAATTGATGCTGCAGATGCAACTGCTCAAGCTGATATTGCCAGTGAAGCTCTTAAAAGACTTGCAGCTGCAGGCTCTGTAAAGGGAGCTCTACAACTACATGAGTTGCGTGGGCTAGCACTGAGACTTGCAAATCATGGGGAGTTAACACGCTTATCGGTCCTGGTAAATAATATGATTACAGCAGGCGAGGGCCGGGAGGCGGCATTTGCAGCTGCTGTGTTGGGGGATAATACTCTGATGGAAAAGGCTTGGCAGGAGACGGGGATGTATGCAGAGGCAGTGATGCATGCCCATGCACATGGTCGGCCATCACTGAAGAATTTGCTGGAATTGTGGAACAAGTCACTACAAAAAGAAATTGAGCATACATCAACTAAACCTAGATCAACAAACTCTGCAACTGCAGATCTGGCTGGTTTGGAAAGGGAACCAACATTACAGAGCTTGAATGACGTGAAGAGGCATCCATTGATTCAAATTGTCCCTCCAGGCATGATGGCTTCATCAGTAAACATACCATCTAATCTGAAGCCCAATGCAGTGGTACAAAATGGTCAACAATCAAGCAAACCTCTGCTGTTGGAAGCACCTCCAACCACTCCTGCTGTAAGTGTGTCTACACCTCTGAGTGTGACTCCACCTGCAAGTATGGCTGCAACTACAAGTGCAAATCTACCTGTAAGTATGGCTCCAACTGCAAGTGCCAATCCACCTGTAAGTATGGCTCCAACTGCAAGTGCAAATCCACCAGTAAGTATGGCTCCAACTGCCAGTGCAGATCCACTTGTAAGTATAGATCCAATCACAAGTGCAAATCCACTTGTAAGTATAGATCCAACCGGGAGTGCAAATCCACTTGTAAGTATAGATCCAATCTTGAGTGCAAATCCACTTGTAAGTATAGATCCAATTGCAAGTGCAGACCCACCTGTAAGTCTCACACCACTAGAAAGTTCAACTCCACCTGGACTGGCAGACCTGTTGTCTCAGCTGTCTGTTTAAAGTTAACTGGTTATAGGATGCCCATTTTCTTTTTGATTAGTGTTCTATATTGCAGTACTCTGATTTATCCCAGGTTTTGTGAGGACCCACCAGTATTAAAAGTTGGCTATAATCTTTTGCCTATTGTACATTATGTATTTCTTAGAGTATTTTATTGCTCTTGGAAACCATGTGCTTTCGAGAGAAAAATGTCTCCATTGATCAGATTAGGTCATTTGTTGAATAATGATTTGTATTTGCATGTTCTTTTCATATTATTTGGATCCTGATGGAATTGATTATTTTGTACAGTAGGAAGCACAACAGGTAATGGTACTGCTATGTACTTTAGAGCATTTTTCCTTCAATGATGAAAAATTCTTCATATTCGTAAT

Fln Alignment:

Contig28699___SMAPTASANP---PVSMAPTASANPPVSMAP-TASADPLVSIDPITSANPLVSIDPTGSANPLVSIDPILSANPLVSIDPIASADPPVSLTPLESSTPPGLA
Q41071_______________SMAQSPSASPTKSPTTPAPTTTAAPTTTAAPPTITATP-----PTTTATPPVSTPPPVSSPPPVTSPPPAATPPPVAT-PVATPPSPV-LVPSPAATPPPAA

SNPs (tot: 26)

Position	A %	C %	G %	T %	Probability
649	80		20		0.995493
673	10		90		0.90298
675		90		10	0.90298
676		90		10	0.90298
677	10			90	0.90298
679	90		10		0.90298
681		90	10		0.90298
864	83			16	0.994512
1031		85		14	0.993533
1143	75		25		0.996473
1324			85	14	0.993533
1325	85		14		0.993533
1617		73		26	1.0
1817	11	88			0.999952
1820		88	11		0.999952
1821		88	11		0.999952
1890		78		21	1.0
2117			11	88	0.923564
2118			11	88	0.923564
2119	88		11		0.923564
2179		14		85	0.993533
2272	10			90	0.90298
2273		10	90		0.90298
2275	90			10	0.90298
2346	85		14		0.993533
2382	14			85	0.993533

SSRs (tot: 2)

Start position	End position	Sequence	Length
256	267	AAG AAG AAG AAG	12
602	613	TTG TTG TTG TTG	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain