SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene28635

Length: 801 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene28635 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Protein kinase, putative n=1 Tax=Ricinus communis RepID=B9T446_RICCO	-	-	0.0	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	69%
Sma3	ATP binding protein	-	-	4.79e-12	-

Source	ECs	Term	Type	e value	Identity
Sma3	Non-specific protein-tyrosine kinase.	EC:2.7.10.2	-	3.276e-09	-
Sma3	Mitogen-activated protein kinase kinase kinase.	EC:2.7.11.25	-	9.556e-08	-

Source	Gene names
Sma3	AT4G31170; AT4g35780; AT4g38470; ATN1; At1g62400; At2g17700; At2g24360; At3g22750; At3g27560; At4g31170; At4g35780; At4g38470; At5g01850; At5g50000; B1131G07.13; CHLREDRAFT_105918; DPK1; DPK2; DPK3; DPK4; F20M13.30; F24O1.13; F8D20.290; GSVIVT00002272001;

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein tyrosine kinase activity	GO:0004713	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	amino acid binding	GO:0016597	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	regulation of stomatal movement	GO:0010119	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	ATPase, F0 complex, subunit A	IPR000568	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Ankyrin repeat	IPR002110	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Amino acid-binding ACT	IPR002912	-	-
Sma3	Uncharacterised protein family UPF0497, trans-membrane plant	IPR006702	-	-
Sma3	ApaG domain	IPR007474	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3		IPR015783	-	-
Sma3	Serine/threonine-protein kinase, ATN1-like	IPR015784	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Peptidase S10, serine carboxypeptidase, active site	IPR018202	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G38470.1	ACT-like protein tyrosine kinase family protein chr4:17999432-18003551 FORWARD LENGTH=575	68%
RefSeq	Arabidopsis thaliana	NP_568041.1	ACT-like protein tyrosine kinase family protein [Arabidopsis thaliana]	68%
RefSeq	Populus trichocarpa	XP_002300929.1	predicted protein, partial [Populus trichocarpa]	76%

Full-Lengther Next Prediction

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
304		33		66	0.997452
323		66		33	0.997452
357	25		75		0.996473
358	75		25		0.996473
367	20		80		0.995493
538	20		80		0.995493
737		33	66		0.997452
738	66	33			0.997452
739		33		66	0.997452
740	33			66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain