SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene28599

Length: 1631 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene28599 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Regulator of nonsense transcripts, putative n=1 Tax=Ricinus communis RepID=B9SD55_RICCO	-	-	0.0	72%
FL-Next	tr=Regulator of nonsense transcripts, putative; Ricinus communis (Castor bean).	-	-	0.0	72%

Source	Gene names
Sma3	At2g39260; B1250G12.14; GSVIVT00018278001; MtrDRAFT_AC151520g31v2; Os02g0631500; OsI_08170; OsJ_07617; PHYPADRAFT_135783; POPTRDRAFT_655978; POPTRDRAFT_886092; RCOM_1070440;

Source	GOs	Term	Type	Identity
Sma3	translation initiation factor activity	GO:0003743	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	RNA metabolic process	GO:0016070	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	MIF4G-like, type 3	IPR003890	-	-
Sma3	Up-frameshift suppressor 2	IPR007193	-	-
Sma3	MIF4-like, type 1/2/3	IPR016021	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G39260.1	" binding;RNA binding chr2:16392288-16399588 REVERSE LENGTH=1181"	67%
RefSeq	Arabidopsis thaliana	NP_181459.4	RNA binding protein [Arabidopsis thaliana]	67%
RefSeq	Populus trichocarpa	XP_002315268.1	predicted protein [Populus trichocarpa]	70%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: tr_plants

Fln subject: B9SD55

Fln msg: Distance to subject end: 380 aas, your sequence is shorter than subject: 468 - 824

Fln protein: MARTKEKVEEASREKGDSVPTENAEDESRMGRQHQGSKQDDEEAQARLEELKKLNEAKSAMRRANLNPERPDSGFLRSLDSSIKRNTAVIKKLKQINEEQREGLLEELKSVNLSKFVSEAVTAICDAKLRSSDINAAVQVCSLLHQRYKDFSPSLIQGLLKVFFPSKTSDDLDIDRSSRAMKKRSTLKLLMELYYVGVIEDAGIFINIIKDLTNIEHFKDRDTTQMNLSLLVSFARQGRIFIGLPLSGQDIQDELYKDLSITVEQKKLLRKAFQSFYDASADLLQSEHSSLRQMEQENAKMLNAKGELSEENAITYEKLRKSYEHLFRSVSSLAEALDMQPPVMPDDGHTTRVTTGEDGSSATTSKDASTPEPVWDDDDNKAFYESLPDLRAFVPAVLLGEVEPKTSEQPHKVPEQQQELSFEPEQGTLSVSDTADGIQESEALRGEGTSDDKSKDKEEKEKEKGKEI

Protein Length: 469

Fln nts: ATTCCCTGCCGACCTATTTGGATTTTTATTTGTTCGTGAATACAGTAATTTTATTTCCGGCCGATCCATATGGACTATATGGAATTTAACCTGTCCAAGAATTCGTAGACATCTTGTTCTCTTAGACATCCAAGTTTGTTCATCCTTTCCTAAGGGCACGCATCTGCTTCCCGATAACTTTCTTTCAGATTGACGTTGGTACGAAACAAGTAATTTTGTACTGCA_-_ATGGCTCGGACCAAGGAGAAAGTTGAGGAAGCAAGTCGAGAGAAGGGGGATTCGGTTCCAACAGAAAATGCAGAAGATGAAAGTAGAATGGGACGCCAACATCAAGGCAGTAAGCAAGATGATGAGGAAGCTCAAGCTCGTCTTGAAGAGCTCAAAAAATTAAATGAAGCAAAGTCTGCAATGCGCAGGGCCAATTTGAATCCAGAAAGGCCAGATTCAGGTTTCCTGAGGTCTCTAGATTCTAGCATCAAGCGCAACACAGCAGTCATAAAAAAGCTTAAGCAGATAAATGAAGAGCAGCGAGAAGGATTGCTGGAGGAACTGAAATCTGTTAACTTGAGCAAATTTGTCAGTGAAGCTGTAACAGCCATCTGTGATGCAAAACTTAGAAGTTCCGACATCAATGCAGCGGTTCAGGTCTGCTCCTTACTTCATCAAAGATACAAGGACTTTTCACCCAGTTTGATACAAGGGCTCTTGAAAGTCTTCTTTCCAAGTAAGACTAGTGATGATCTGGACATAGATCGGAGCTCAAGAGCAATGAAGAAACGAAGCACACTTAAGCTTCTTATGGAGCTTTATTATGTTGGTGTTATAGAGGATGCTGGTATTTTCATAAATATCATAAAGGACCTTACAAACATAGAGCATTTTAAGGATAGGGATACTACTCAAATGAATCTATCACTGCTTGTGAGTTTTGCTCGTCAAGGGAGGATCTTCATAGGGCTCCCACTTTCAGGGCAAGATATACAAGATGAGCTCTATAAGGATCTCAGCATTACCGTGGAACAGAAGAAGCTTCTGAGGAAGGCATTTCAGTCATTTTATGATGCATCGGCAGATCTTCTTCAATCAGAGCATTCTTCACTTCGACAAATGGAGCAAGAGAATGCAAAAATGCTGAATGCGAAGGGAGAACTCAGTGAAGAAAATGCAATTACATATGAAAAACTGAGAAAATCTTATGAACACTTGTTCCGGAGTGTCTCTTCTTTGGCTGAAGCACTAGATATGCAGCCTCCTGTCATGCCAGATGATGGCCACACCACAAGAGTTACAACTGGTGAAGATGGATCCTCAGCTACCACTTCGAAGGATGCTTCCACTCCTGAACCTGTCTGGGATGATGATGATAATAAAGCTTTCTATGAGAGCTTACCAGATCTTAGGGCATTTGTTCCTGCGGTGTTGCTGGGAGAAGTGGAACCAAAGACCAGTGAGCAACCGCATAAGGTTCCTGAACAACAGCAGGAGCTATCATTCGAGCCAGAGCAAGGTACCTTGTCTGTTTCAGATACTGCAGATGGAATCCAAGAGTCTGAAGCCTTACGAGGAGAGGGAACATCTGATGATAAGTCCAAGGACAAAGAAGAGAAGGAGAAGGAAAAGGGTAAAGAAATAGG

Fln Alignment:

Contig28599___ENAEDESRMGRQHQGSKQDDEEAQARLEELKKLNEAKSAMRRANLNPERPDSGFLRSLDSSIKRNTAVIKKLKQINEEQREGLLEELKSVNLSKFVSEAVTAICDAKLRSSDINAAVQVCSLLHQRYKDFSPSLIQGLLKVFFPSKTSDDLDIDRSSRAMKKRSTLKLLMELYYVGVIEDAGIFINIIKDLTNIEHFKDRDTTQMNLSLLVSFARQGRIFIGLPLSGQDIQDELYKDLSITVEQKKLLRKAFQSFYDASADLLQSEHSSLRQMEQENAKMLNAKGELSEENAITYEKLRKSYEHLFRSVSSLAEALDMQPPVMPDDGHTTRVTTGEDGSSATTSKDASTPEPVWDDDDNKAFYESLPDLRAFVPAVLLGEVEPKTSEQPHKVPEQQQELSFEPEQGTLSVSDTADGIQESEAL
B9SD55_______________EQHEDDGRVGGESQ-SKQDDEEAAARLEEIKKSIEAKAALRQSNLNPERPDSGFLRTLDSSIKRNTAVIKKLKQINEEQREGLMDELRNVNLSKFVSEAVTAICDAKLRSSDIQAAVQICSLLHQRYKDFSPSLVQGLLKVFFPGKSGEELDVDRNSKAMKKRSTLKLLLELYFVGVIEDSSIFINIIKDLTSVEHLKDRDATQTNLTLLASFARQGRVFLGLSLSGQEIHEEFVKGLNITTDQKKIFRKAFNTYYDAVSELLQSEHTSLRQMEHENAKILNAKGELSDENVASYEKLRKSYDHLYRNVSSLAEALDMQPPVMPEDGHTTRVTTGEDASSPATGKDSSVLEALWDDEDTRAFYECLPDLRAFVPAVLLGEAEPKVNEQSVKTQEQPS----QPTQDTAESSADTGTVQEGKSI

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
80		33		66	1.0
385	10		90		0.90298
391	90		10		0.90298
398	20		80		0.999996
436		10		90	0.90298
455	12			87	0.992554
461	88			11	0.923564
505	87			12	0.992554
506		12		87	0.992554
507		12		87	0.992554
508	12			87	0.992554

SSRs (tot: 1)

Start position	End position	Sequence	Length
270	281	ATC ATC ATC ATC	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain