SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene28479

Length: 550 nt

UniGene Fasta

>sp_v3.0_unigene28479
ACATTCGCCGAACGTAGTGGCGCTGTTTGCCACGCGTCCGGTCACCACACACATGTCTGAAATCGTGCAAATGAGCTGCCGCCAATGCGGCACTACGGACACACCCCTCTGGCGTTACGGTCCTGAGGGGTCCAAGAGCCTCTGCAACGCCTGTGGCATCCGCTGGAAGCGTGCTAACAAGTACCGGTTGTCTGGCGGCATTAGAAAGCGCAAACACGTGCCGATCGCGGCCTCCCGGCATCACCCAAAGATCCAAACAAAGAACGACACGTTTAATCACTTTCTGGAAACTGTCGAAGATGAATATGAGCATGAGACCCATGAGCAGTGCTCGCACCGGCTTCTCCAGCAATCGTAAGTGCACCAATGACGGATGACGAGAGCGAGGCCGTCGCTTCGGAGACAGAGACAGAGGCCGACCGGAGAGGAGCCCTGTTTCTTCACTTTTTCGCAAACCAGGCAAAGCTTGAGCTTGCGTGAACTGTAACTCATAGTGTTGTATTTTCCTTTTGTATAGAAAAGAAAAACAACTAAACAACCGTGTACATAC

Ace file of the UniGene sp_v3.0_unigene28479

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative GATA-type zinc finger transcription factor [Arabidopsis thaliana] gb\|ABL66761.1\| At2g18380 [Arabidopsis thaliana] dbj\|BAH30389.1\| hypothetical protein [Arabidopsis thaliana]	-	-	1.0e-08	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	65%

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G18380.1	GATA20 GATA transcription factor 20 chr2:7982868-7984017 REVERSE LENGTH=208	2.0e-12	50%
RefSeq	Arabidopsis thaliana	NP_179429.2	GATA transcription factor 20 [Arabidopsis thaliana]	3.0e-12	50%
RefSeq	Populus trichocarpa	XP_002330240.1	predicted protein [Populus trichocarpa]	4.0e-11	56%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LRB8

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 37 aas, putative chimeric sequence, your sequence is shorter than subject: 119 - 380

Fln protein: HSPNVVALFATRPVTTHMSEIVQMSCRQCGTTDTPLWRYGPEGSKSLCNACGIRWKRANKYRLSGGIRKRKHVPIAASRHHPKIQTKNDTFNHFLETVEDEYEHETHEQCSHRLLQQS*

Protein Length: 120

Fln nts: ACATTCGCCGAACGTAGTGGCGCTGTTTGCCACGCGTCCGGTCACCACACACATGTCTGAAATCGTGCAAATGAGCTGCCGCCAATGCGGCACTACGGACACACCCCTCTGGCGTTACGGTCCTGAGGGGTCCAAGAGCCTCTGCAACGCCTGTGGCATCCGCTGGAAGCGTGCTAACAAGTACCGGTTGTCTGGCGGCATTAGAAAGCGCAAACACGTGCCGATCGCGGCCTCCCGGCATCACCCAAAGATCCAAACAAAGAACGACACGTTTAATCACTTTCTGGAAACTGTCGAAGATGAATATGAGCATGAGACCCATGAGCAGTGCTCGCACCGGCTTCTCCAGCAATCGTAA___GTGCACCAATGACGGATGACGAGAGCGAGGCCGTCGCTTCGGAGACAGAGACAGAGGCCGACCGGAGAGGAGCCCTGTTTCTTCACTTTTTCGCAAACCAGGCAAAGCTTGAGCTTGCGTGAACTGTAACTCATAGTGTTGTATTTTCCTTTTGTATAGAAAAGAAAAACAACTAAACAACCGTGTACATAC

Fln Alignment:

Contig28479___CRQCGTTDTPLWRYGPEGSKSLCNACGIRWKRANK
B8LRB8_______________CVDCKTTKTPLWRSGPQGPKSLCNACGIRYRKARR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain