SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene28438

Length: 630 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene28438 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Similar to peptide transporter [Arabidopsis thaliana]	-	-	1.0e-34	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	57%
Sma3	Chromosome chr18 scaffold_122, whole genome shotgun sequence	-	-	2.275e-31	-

Source	Gene names
Sma3	At1g22540; At1g22550; At1g72115; At1g72120; At1g72130; At1g72130/T9N14_15; At1g72140; At2g02040; At2g37900; At3g54140; At5g01180; F12K8.11; F12K8.12; F14H20.11; F24B22.100; F28P5.2; F5K20_260; F7J8_160; GSVIVT00001821001; GSVIVT00001825001; GSVIVT00001827

Source	GOs	Term	Type	Identity
Sma3	plant-type vacuole	GO:0000325	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	vacuolar membrane	GO:0005774	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	transporter activity	GO:0005215	Molecular Function	-
Sma3	high affinity oligopeptide transporter activity	GO:0015334	Molecular Function	-
Sma3	dipeptide transporter activity	GO:0042936	Molecular Function	-
Sma3	tripeptide transporter activity	GO:0042937	Molecular Function	-
Sma3	sequence-specific DNA binding	GO:0043565	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	oligopeptide transport	GO:0006857	Biological Process	-
Sma3	protein transport	GO:0015031	Biological Process	-
Sma3	dipeptide transport	GO:0042938	Biological Process	-
Sma3	tripeptide transport	GO:0042939	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Oligopeptide transporter	IPR000109	-	-
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	Legume lectin, alpha chain, conserved site	IPR000985	-	-
Sma3	Homeodomain	IPR001356	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Twin-arginine translocation pathway, signal sequence	IPR006311	-	-
Sma3	POX	IPR006563	-	-
Sma3		IPR012287	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	Homeobox, conserved site	IPR017970	-	-
Sma3	PTR2 family proton/oligopeptide symporter, conserved site	IPR018456	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G22540.1	Major facilitator superfamily protein chr1:7964202-7966222 FORWARD LENGTH=557	9.99967e-42	54%
RefSeq	Arabidopsis thaliana	NP_173670.2	putative peptide/nitrate transporter [Arabidopsis thaliana]	9.99967e-42	54%
RefSeq	Populus trichocarpa	XP_002325970.1	predicted protein [Populus trichocarpa]	4.00001e-41	54%

Full-Lengther Next Prediction

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
96		33		66	0.997452
131	33		66		0.997452
140	33	66			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain