SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene28347

Length: 880 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene28347 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	vacuolar sorting protein vps29 [Aedes aegypti] ref\|XP_001660257.1\| vacuolar sorting protein vps29 [Aedes aegypti] gb\|ABF18153.1\| membrane coat complex retromer subunit VPS29/PEP11 [Aedes aegypti] gb\|EAT36754.1\| vacuolar sorting protein vps29 [Aedes aegypt	-	-	2.0e-37	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	65%
Sma3	Vacuolar protein sorting, putative	-	-	1.091e-08	-

Source	Gene names
Sma3	AT3G47810; At3g47810; CHLREDRAFT_195544; GSVIVT00000118001; GSVIVT00037022001; MICPUCDRAFT_59625; MICPUN_97830; Os02g0265400; OsI_06659; OsJ_06169; P0006C08.21; PHATRDRAFT_17936; PHYPADRAFT_202685; PHYPADRAFT_234805; POPTRDRAFT_727869; POPTRDRAFT_828700;

Source	GOs	Term	Type	Identity
Sma3	multivesicular body	GO:0005771	Cellular Component	-
Sma3	microsome	GO:0005792	Cellular Component	-
Sma3	retromer complex	GO:0030904	Cellular Component	-
Sma3	protein complex	GO:0043234	Cellular Component	-
Sma3	GTPase activity	GO:0003924	Molecular Function	-
Sma3	serine-type endopeptidase activity	GO:0004252	Molecular Function	-
Sma3	glutamate-ammonia ligase activity	GO:0004356	Molecular Function	-
Sma3	GTP binding	GO:0005525	Molecular Function	-
Sma3	hydrolase activity	GO:0016787	Molecular Function	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	protein targeting to vacuole	GO:0006623	Biological Process	-
Sma3	nitrogen compound metabolic process	GO:0006807	Biological Process	-
Sma3	protein polymerization	GO:0051258	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Phosphodiesterase MJ0936	IPR000979	-	-
Sma3	Peptidase S14, ClpP	IPR001907	-	-
Sma3	Metallophosphoesterase domain	IPR004843	-	-
Sma3	Glutamine synthetase, catalytic domain	IPR008146	-	-
Sma3	Tubulin/FtsZ, 2-layer sandwich domain	IPR018316	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G47810.2	-	5.00264e-43	61%
RefSeq	Arabidopsis thaliana	NP_974399.2	vacuolar protein sorting 29 protein [Arabidopsis thaliana]	7.00649e-43	61%
RefSeq	Populus trichocarpa	XP_002331858.1	predicted protein [Populus trichocarpa]	0.0	65%

Full-Lengther Next Prediction

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
177	85			14	0.993533
195		42		57	1.0
213		42		57	1.0
225	62			37	1.0
252	37	62			1.0
264		62	37		1.0
315			62	37	1.0
339	37	62			1.0
384		37		62	1.0
527	14	85			0.993533
529	28	14		57	1.0
530	33			66	1.0
531	33	66			1.0
532	20			80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain