SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene28021

Length: 1141 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene28021

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Properoxidase n=1 Tax=Picea abies RepID=Q0JW34_PICAB	-	-	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	82%
Sma3	Peroxidase	-	-	-

Source	ECs	Term	Type	e value	Identity
Sma3	Peroxidase.	EC:1.11.1.7	-	0.0	-

Source	KEGGs	Term	Identity
Sma3	Phenylalanine metabolism	00360	%
Sma3	Methane metabolism	00680	%
Sma3	Phenylpropanoid biosynthesis	00940	%
Sma3	Biosynthesis of phenylpropanoids	01061	%
Sma3	Metabolic pathways	01100	%
Sma3	Biosynthesis of secondary metabolites	01110	%

Source	Gene names
Sma3	AP22.54; At4g36430; At5g05340; At5g58390; At5g58400; C7A10.930; DIDI 6G-3B; FBP3; GSVIVT00014550001; GSVIVT00015157001; GSVIVT00015158001; GSVIVT00015159001; GSVIVT00015160001; GSVIVT00018769001; GSVIVT00018771001; GSVIVT00023967001; GSVIVT00023969001; GS

Source	GOs	Term	Type	Identity
Sma3	extracellular region	GO:0005576	Cellular Component	-
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	peroxidase activity	GO:0004601	Molecular Function	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	calcium ion binding	GO:0005509	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	heme binding	GO:0020037	Molecular Function	-
Sma3	response to oxidative stress	GO:0006979	Biological Process	-
Sma3	hydrogen peroxide catabolic process	GO:0042744	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Plant peroxidase	IPR000823	-	-
Sma3	Haem peroxidase, plant/fungal/bacterial	IPR002016	-	-
Sma3	Alpha-N-acetylglucosaminidase	IPR007781	-	-
Sma3	GCN5-like 1	IPR009395	-	-
Sma3	Thymidylate kinase, conserved site	IPR018095	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-
Sma3	Peroxidase, active site	IPR019794	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G05340.1	Peroxidase superfamily protein chr5:1579142-1580819 REVERSE LENGTH=324	63%
RefSeq	Arabidopsis thaliana	NP_196153.1	peroxidase 52 [Arabidopsis thaliana]	63%
RefSeq	Populus trichocarpa	XP_002328991.1	predicted protein [Populus trichocarpa]	66%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NU12

Fln msg: your sequence is longer than subject: 278 - 208

Fln protein: MLFLLLNLSVLLLLQGCDGSVLLDDTSSFTGEKTAVPNKNSARGFGVVDRIKKKLEQACSGVVSCADILAIAARDSVVTLGGPTWTVMLGRRDSRTASLSDANNGIPPPTSDLANLTSNFRAHGLSKREMVALAGAHTIGKARCVNFRGHIYNDSNIDTAYAKSLQDRCPKSGGDNKLSPLDYKTPTKFENNYYKNLVAEKGLLHSDQELFNGVSTDSLVTEYSKNLELFEREFTAAIIKMGNITPLTGSQGEIRENCRKRNSDSAIFHFQHASDTQ*

Protein Length: 279

Fln nts: ATATACATGCCATTGCATTTCCGGAGTCGAATTAGAGCATAAAAGTTAT_-_ATGTTATTCTTATTACTAAATTTAAGCGTTCTTCTCCTCTTGCAGGGTTGTGATGGGTCTGTTCTTCTGGACGATACCTCGAGTTTTACAGGTGAAAAAACAGCAGTTCCCAATAAGAATTCCGCCAGAGGTTTTGGGGTCGTTGATAGAATAAAGAAGAAGCTGGAGCAGGCTTGCAGCGGTGTCGTATCATGTGCTGACATTTTGGCAATTGCTGCTCGCGATTCTGTTGTAACGTTGGGAGGTCCTACATGGACAGTGATGCTGGGAAGAAGAGATTCCAGGACCGCAAGTCTAAGTGATGCCAACAACGGTATTCCCCCTCCCACTTCTGACCTTGCCAATCTCACCTCCAATTTTCGAGCTCATGGACTTTCTAAACGGGAAATGGTTGCACTTGCAGGTGCTCACACCATTGGTAAAGCGCGTTGCGTGAACTTCAGAGGTCACATATACAATGATTCAAACATAGACACAGCGTACGCCAAGTCTTTACAAGACCGCTGCCCCAAGAGTGGAGGCGACAACAAATTGTCGCCACTTGATTACAAAACGCCAACAAAGTTCGAAAACAATTACTACAAAAATTTGGTAGCAGAGAAAGGACTTCTGCACTCTGATCAAGAGTTGTTCAATGGAGTGTCTACTGATTCTCTGGTTACTGAGTACAGCAAAAACTTGGAACTTTTCGAGAGAGAATTCACTGCTGCAATTATCAAGATGGGAAATATCACGCCTCTAACTGGTTCCCAAGGAGAGATCCGGGAGAACTGCAGAAAGCGTAACTCAGATAGTGCCATCTTCCATTTCCAGCACGCATCTGATACACAATGA___ATAATTATTATTTCATGAAATGTGGATATGCTCTTATGATATAAATCTTATTGCTTGATCTAGGCCTAATCATATGATGGACAAATGATTGGGAAAATCAATAACGAAATGGTATGGAAATTATATTCTTATCTGTATGAACAAATGATTGGGAAAATCAATAACGAAATGGTATGGAAATTATATTCTTATCTGTACGCAAGGCCATGGTTGCTAAAATAAATGGCATACCCATGTAATCGTTTCTTTGTTTGCACG

Fln Alignment:

Contig28021___LEQACSGVVSCADILAIAARDSVVTLGGPTWTVMLGRRDSRTASLSDANNGIPPPTSDLANLTSNFRAHGLSKREMVALAGAHTIGKARCVNFRGHIYNDSNIDTAYAKSLQDRCPKSGGDNKLSPLDYKTPTKFENNYYKNLVAEKGLLHSDQELFNGVSTDSLVTEYSKNLELFEREFTAAIIKMGNITPLTGSQGEIRENCRKRN
A9NU12_______________MEKACSGVVSCADILAVAARDSVVTLGGPTWTVMLGRRDSGTANRTAANTNIPAPTANLANLTSKFGAQGLSKREMVVLSGGHTIGKARCTSFRDHIYNDSNIDTAYAKSLQAKCPRSGGDNRLSPLDYQTPTKFENNYYKNLVARKGLLHSDQELFNGVSTDSLVTKYSKNLKLFENDFAAAMIKMGNIMPLTGSQGQIRKNCRKRN

SNPs (tot: 28)

Position	A %	C %	G %	T %	Probability
74	55			44	1.0
84	40	60			1.0
111	40		60		1.0
113		40		60	1.0
149	12		87		0.992554
167		87	12		0.992554
176		50	50		1.0
286		66		33	0.997452
317			66	33	0.997452
338		66		33	0.997452
458		33		66	0.997452
487	66			33	0.997452
488		66	33		0.997452
489			33	66	0.997452
490			33	66	0.997452
660		40		60	1.0
668		42		57	1.0
677	42		57		1.0
678		42		57	1.0
680			57	42	1.0
713	42			57	1.0
745	50		50		1.0
749	50	50			1.0
755		25		75	1.0
770	12		87		0.992554
926		14		85	0.993533
1022		20		80	0.995493
1024	80	20			0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain