SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene27898

Length: 1227 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene27898

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Minor allergen Alt a, putative n=4 Tax=fabids RepID=B9T876_RICCO	-	-	81%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Sma3	Putative uncharacterized protein	-	-	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Flavodoxin/nitric oxide synthase	IPR008254	-	0.0	-
Sma3	Flavoprotein WrbA	IPR010089	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G27270.1	Quinone reductase family protein chr4:13661458-13663243 REVERSE LENGTH=205	82%
RefSeq	Arabidopsis thaliana	NP_194457.2	Quinone reductase family protein [Arabidopsis thaliana]	82%
RefSeq	Populus trichocarpa	XP_002319258.1	predicted protein [Populus trichocarpa]	84%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LRI9

Fln msg:

Fln protein: MAVKIYIVYYSMYGHVEKLAEEIKNGAASVEGVEATLWQVPETLPEEVLTKLYAPPKSKVPTIEPQQLADADGLLFGFPTRYGMMAAQFKAFLDATGGLWRTQQLAGKPAGLFYSTGSQGGGQETTALTAITQLVHHGLLFVPVGYTFGAGMFEMEQVKGGSPYGSGTYAGDGSRQPSKLELEQAFHQGKYLAGIAKKLKS*

Protein Length: 203

Fln nts: CTACGTCGAAAGAGGCGTTGGAGAGTCAGGTCTATGATGGTTGCGCACCCTGTAACATCTAACTACCACAACACTCATGACTCGTCAAACCTGACGCTCTTCATCTCTGGATCTGAGGTAAGCAAGCTCCCGGCATCGGTACGCTTTCAGGCATTTGCTATAAAATGCAGCGCTTCCTGGCTGCTTATCACACTTCCGACTCATCGTTCTTTCCGTGAGAAATAGTGAATGAGCATTGTTCGTTGATCCAACGCGTTCAGCAGATTCAAA_-_ATGGCCGTCAAAATTTACATTGTGTACTATTCTATGTATGGACATGTAGAGAAACTTGCTGAGGAGATTAAAAACGGTGCCGCCTCTGTGGAAGGAGTAGAAGCCACGTTGTGGCAGGTTCCAGAAACACTCCCAGAGGAGGTACTCACAAAATTGTATGCACCGCCCAAGAGTAAAGTGCCAACCATCGAGCCTCAGCAACTCGCAGATGCAGATGGCCTTTTGTTTGGCTTTCCCACGAGATACGGAATGATGGCAGCTCAGTTTAAAGCTTTCTTGGATGCGACAGGTGGGCTATGGCGAACTCAACAATTAGCAGGGAAGCCAGCCGGACTTTTCTACAGCACAGGATCTCAGGGTGGTGGACAGGAGACGACTGCATTGACAGCTATAACACAGCTGGTTCACCATGGCTTGCTCTTTGTACCAGTGGGATACACCTTTGGAGCTGGAATGTTTGAGATGGAACAAGTGAAAGGCGGCAGTCCATATGGTTCTGGAACTTATGCTGGTGATGGTTCACGTCAGCCAAGCAAGCTAGAATTGGAGCAAGCTTTTCATCAGGGAAAATATCTTGCTGGCATTGCAAAGAAACTCAAGTCCTGA___TTTACACAGCACTATTGTTCCTTCTGCCTTGCTGCAATAGTTATTTCTGATTCCTGTGCCCATTTAGCTTGGTTTATATTTGCCAGTGTTCAGTTCATAGTACTTTAAACTATTGGTTTGCCTCACAACAATCCATATAGCATAGTTAGTGATAGGGCACTTAAACCGTTTCTTTGGTGAATTATCATGGTTTTTAGTTGCCTGATTCAAATTATTTCTCAAAACTCTTGTTAGTTGCCTGGAATTGCTATTGTAATGATGATGCACCGAACAACTTTAAAAGCTCTGGAATTTTTTTATATTAATTTAATGCTAATGTAACCCAGTTCTTTGGTTGCATGTTTTCTAGAC

Fln Alignment:

Contig27898___MAVKIYIVYYSMYGHVEKLAEEIKNGAASVEGVEATLWQVPETLPEEVLTKLYAPPKSKVPTIEPQQLADADGLLFGFPTRYGMMAAQFKAFLDATGGLWRTQQLAGKPAGLFYXXXXXXXXXXXXALTAITQLVHHGLLFVPVGYTFGAGMFEMEQVKGGSPYGSGTYAGDGSRQPSKLELEQAFHQGKYLAGIAKKLK
B8LRI9_______________MAVKIYIVYYSMYGHVEKLAEEIKKGAASVEGVEATLWQVPETLPEEVLIKMNAPPKTKVPTIEPQQLADADGLLFGFPTRYGMMAAQFKAFLDATGGLWRTQQLAGKPAGLFYSTGSQGGGQETTALTAITQLVHHGMLFVPVGYTFGAGMFEMEQVKGGSPYGSGTFAGDGSRQPSKLELEQAFHQGKYLAGIAKKLK

SNPs (tot: 33)

Position	A %	C %	G %	T %	Probability
114		33		66	0.997452
118		33	66		0.997452
128		33		66	0.997452
196		81		18	0.999994
230			12	87	0.999981
373		45	54		1.0
393	90	9			0.991528
435	33		66		1.0
510	16		83		0.996397
515	83			16	0.996397
547			50	50	1.0
560			90	9	0.991528
561		45		54	1.0
563			90	9	0.991528
566		9		90	0.991528
567	90			9	0.991528
573	90			9	0.991528
604	30	70			1.0
630		27		72	1.0
649		30	70		1.0
801	88			11	0.923564
804		88	11		0.923564
816	16		83		0.994512
998		61	38		1.0
1009		58		41	1.0
1042		88		11	0.923564
1076	27		72		1.0
1143		90		10	0.90298
1144		90		10	0.90298
1157	66			33	1.0
1164	11		88		0.923564
1165	11		88		0.923564
1199	25	75			0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain