SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene27736

Length: 482 nt

UniGene Fasta

>sp_v3.0_unigene27736
AGGGCAGGGCATCAGTAGTTTGCAGTTCATTCACAAAACCAGCGGATCTACAGACTCAGCTTTTATAATCATGAGGTTGAGCTGCAATGGATGCCGAGTCCTCCGAAAGGGCTGCAGCGAATCCTGCGTTCTCAGGCCATGCCTCCAATGGATAAGGAGCCCAGAGTCTCAGGCGAACGCTACCGCTTTCTTAGCCAAGTTCTATGGGCGCACGGGTTTGATCAATCTGATATGCAACGGCCCCGAGCATTTGAGACCTGTTATGTTCCGGTCTCTTTTATATGATGCATGCGGCAGGATGTTGGATCCAATATTTGGTTCAGTAGGACTTGCGTGGTCGGGGAACTGGGCATTGTGTCAATCGGGAGTCGAAAGCATCCTGCAGGGAAATTCGGCGTCTCATGTTGTCCCTATCAAAGCCATGGCCAGCGAGCTGCACAGAGTAAAAGCCAAAGACCGATTCAAGCGCGTCTCCCGTGCAA

Ace file of the UniGene sp_v3.0_unigene27736

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	LOB domain-containing protein, putative	-	-	0.0	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	31%
Sma3	Seed specific protein Bn15D17A	-	-	4.836e-16	-

Source	Gene names
Sma3	ASL36; ASL37; ASL38; ASL39; ASL40; ASL41; GSVIVT00001451001; GSVIVT00014946001; GSVIVT00017674001; GSVIVT00019643001; GSVIVT00030342001; GSVIVT00038218001; LBD37; LBD38; LBD39; LBD40; LBD41; LBD42; LOC_Os03g33090; LOC_Os03g41330; OSJNBa0035N15.7; OSJNBb00

Source	GOs	Term	Type	e value	Identity
Sma3	response to gibberellin stimulus	GO:0009739	Biological Process	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Lateral organ boundaries, LOB	IPR004883	-	0.0	-
Sma3	Asymmetric leaves, AS2/LOB	IPR017414	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G67100.1	LBD40 LOB domain-containing protein 40 chr1:25053801-25054659 FORWARD LENGTH=233	69%
RefSeq	Arabidopsis thaliana	NP_176881.1	LOB domain-containing protein 40 [Arabidopsis thaliana]	69%
RefSeq	Populus trichocarpa	XP_002305815.1	predicted protein [Populus trichocarpa]	66%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ABY4

Fln msg: Distance to subject end: 45 aas, No stop codon before M and low homology subject, your sequence is shorter than subject: 137 - 186

Fln protein: MRLSCNGCRVLRKGCSESCVLRPCLQWIRSPESQANATAFLAKFYGRTGLINLICNGPEHLRPVMFRSLLYDACGRMLDPIFGSVGLAWSGNWALCQSGVESILQGNSASHVVPIKAMASELHRVKAKDRFKRVSRA

Protein Length: 138

Fln nts: AGGGCAGGGCATCAGTAGTTTGCAGTTCATTCACAAAACCAGCGGATCTACAGACTCAGCTTTTATAATC_-_ATGAGGTTGAGCTGCAATGGATGCCGAGTCCTCCGAAAGGGCTGCAGCGAATCCTGCGTTCTCAGGCCATGCCTCCAATGGATAAGGAGCCCAGAGTCTCAGGCGAACGCTACCGCTTTCTTAGCCAAGTTCTATGGGCGCACGGGTTTGATCAATCTGATATGCAACGGCCCCGAGCATTTGAGACCTGTTATGTTCCGGTCTCTTTTATATGATGCATGCGGCAGGATGTTGGATCCAATATTTGGTTCAGTAGGACTTGCGTGGTCGGGGAACTGGGCATTGTGTCAATCGGGAGTCGAAAGCATCCTGCAGGGAAATTCGGCGTCTCATGTTGTCCCTATCAAAGCCATGGCCAGCGAGCTGCACAGAGTAAAAGCCAAAGACCGATTCAAGCGCGTCTCCCGTGCAA

Fln Alignment:

Contig27736___CNGCRVLRKGCSESCVLRPCLQWIRSPESQANATAFLAKFYGRTGLINLICNGPEHLRPVMFRSLLYDACGRMLDPIFGSVGLAW
D5ABY4_______________CAACKLLRRRCTESCVLAPYF-----PQNDAQKFADAHRVFGASNIIKMLEDLPLEKRADAVSSMVYEASARLRDPVYGCAGTIW

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
139	50	50			1.0
156	50		50		1.0
161		50	50		1.0
166	50		50		1.0
202		50		50	1.0
205		50		50	1.0
217	50			50	1.0
218		50		50	1.0
251	50			50	1.0
261		50		50	1.0
269	50	50			1.0
283		40		60	1.0
292		60		40	1.0
370		66	33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain