SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene27362

Length: 2471 nt

UniGene Fasta

>sp_v3.0_unigene27362
AAATTGCAGTCCATATCCATATATAGGTGCCAAATTTGTAAGTGCTTGAACTCATGTCTTCTGTGCACTCGAAAACCTAAAACCGGTTTTCCCAATTGGTACTTGACGAGAAATAACCCTGAGATCAAGATCAGAGCACATTGTTGCACTGTTGATCCAGCCATTATTAATAGAATGAATGATCACCGGGACTACACAAGAGGTGGAGGAGCAATAGAAAATCCCAACTCAGATGGGTGCTCATTGAAAAGCAGGATCTTTGTTGGTGGGTTGGGAGCTTCAGTCACGCCCAATGATTTGGAGGCAACATTTTCCTCACTGGGTCGGGTGCATGGCGTGGAAATCATCCGATCAAATGATCGTAACTTCGGTTATATGGATTTTGAACCATTCTCAGACAAGGCTCTCAGCAAGCTTTTCAGCTCGTATAATGGATGCGTGTGGAAAGGAGGGCGATTGAGACTGGAAAAGGCCAAAGAACATTATCTAGCGCGGTTGCGTCAGGAATGGGCTGCAGAAGGTGCACAATCAGCAACCATCACTGCTGAAGCTGATGCAAGCACAACCTCCAATACACCCGATAAGAGAATACAAATGTTAGCAGAGAAAGGTGGATTAAAGATGTTTTTCCCAAGACTGAAGAAGATCAAGATTTTGCCAAGCAAGGGAACGGGTAAACATAAGTACAGTTTTCAGCGTGTTGAAAGTCTGCCACTGCATCAACTTCAGGTTTGTAGCTACAATGAGCACAGCATGAATCCTGAAAGTGATGGAAGTAATCATAACGTTCTAAATGTGGGTAATGATACGCTTTCCGATGGAGGCATATGTGAAAAAGAGGTTAATATCATGAATAGAGTTATGCAAAAACTGTTTGAAAATGAAGACCAAATACAGATGGAAACAGAACAGACTGACAAGACTCAGCCTGTACATGTTTATAAATATGCAAAGAAAAGACCAGGCAATGCTAGAATAGACATGGAAAAGTTTAATGACTCAGATGATACTGAAGGGTCCAATAATAGTGAAGCTGCTGTTGAAAATTTAGATGAGCTTCCTATGGCTAAAAATGTTGCACAAGATTTGATAAAGGGATCAGATAATATAGAGACAGTAAGCCCCGAGTCAGATCAAGTTGTCAAGGATTTGCAGGATGATGCGAATTTTTCTAGGGGAATCATAGAAAAAATTGCAAGAACAAAGTCACATGAGTCAACATTCATGAAAGATAAATTCTTCAACGTGAAATCAGGGGAGAATGATTTTAGAATGAATGTTCAGAAGAGAATTACCCCAAAAAATACAATTTTTCAACCTGTGGAAGGGGATGCTGAATACCAACCTGAAGATCAGGAACCAGAGGTGAAAAAAAGGGTTAGGGTCAGGGACACCAGCTGTGGTCCAATCCAGCATGAGAAGGCTAGGGGCAACTCAAACATTGACATTGGATTGGAGGTGAAATCTAACAGTGACTTCAAAGTTCAGGGGAATCCTGAATACCAACCTGAAGTGCACAAACCAGATGTGAGGAAAAGGGTTAGAGTTGGAGACACCGGCTGTGGTCCAATCCAGCACGAGGAGGCCCGGGGCAACTCAAACATCAACATTGGAGTAGAGGTGAAGTCTAACACTGATTTCAAAGTGCAGGACAGTGATAGAGTATCACAATTACAAGGTGATACTCACTCCTGGGTACAGAAGGCTTCTTGGAAAGATCTGGTTGGTGAAACAGGGAGATTTTCCTTTTCACTTTCTAGCATTATAGGAGGCATCTCTTATTCTTCATCTGCTGTAAAATCCAACGCGAGTGAAACTGATCAAACAGCCAATAACGACTCTCTAGAGGATGGTACTGAGGAAGTAAACAGAAAAATGTCAAAGAGGAGTGGAAATAATGGGATTCAAGAGGGGCTTCAGTGCTCAAATGAAGTTTCACAATTATTCAGAAGGCAAGCCATTAAGCCTCCATGTTTTGAGCCAGAGGACAAGCCTGAACATGTTGGTGAGATGAAAATTATGTCTGATGCAGTAGAAGGACCCAAGGAGAATACAACAGAAATCCAAAGGCAGGATAAAAGATGCAAAGAAGATAAAGATTTACAGCTGTATACACCAAACAAAATTTCTTCTTCAACCTGTACATTTATGAGATCTGAAGATGCAGAAGATGAATGGCTCAAGTCCAAGGAAGTTGTTCGGGGTTATGCTAAGGCTCGTAGGAAAATGGCCCTAAAAAATATAAAGATGTTAGGAGTAGATCCTGCAAGAAGGCATTGATATCTGGAGCTGTATGTGTAGTACTTTCTTATTGACACAGCCCTTGGAATTTGAAAAATTGTACAAGCAGATTGCTCTTGTATTCCAATTTGAGCTGCCAAATTGTCTTCCTTAGTGTTTTTCCTCCTGTTATTTGAGAAAGGAATCGTTTATTTTCATTATCGTTTGTTTTATTTTATTGAAATTCACCT

Ace file of the UniGene sp_v3.0_unigene27362

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pfam00076, RRM_1, RNA recognition motif	-	-	0.0001	30%
FL-Next	tr=Putative uncharacterized protein Sb04g003130; Sorghum bicolor (Sorghum) (Sorghum vulgare).	-	-	0.0	29%

Source	Gene names
Sma3	At5g58130; GSVIVT00002351001; MtrDRAFT_AC154867g21v2; PHYPADRAFT_162003; POPTRDRAFT_584525;

Source	GOs	Term	Type	e value	Identity
Sma3	nucleotide binding	GO:0000166	Molecular Function	0.0	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Pyridoxal phosphate-dependent decarboxylase	IPR002129	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G58130.1	ROS3 RNA-binding (RRM/RBD/RNP motifs) family protein chr5:23521190-23523766 REVERSE LENGTH=748	0.0	45%
RefSeq	Arabidopsis thaliana	NP_200621.1	RNA recognition motif-containing protein [Arabidopsis thaliana]	0.0	45%
RefSeq	Populus trichocarpa	XP_002331422.1	predicted protein [Populus trichocarpa]	2.00386e-43	45%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: tr_plants

Fln subject: C5XUI8

Fln msg: No stop codon before M and low homology subject, your sequence is longer than subject: 702 - 569

Fln protein: MNDHRDYTRGGGAIENPNSDGCSLKSRIFVGGLGASVTPNDLEATFSSLGRVHGVEIIRSNDRNFGYMDFEPFSDKALSKLFSSYNGCVWKGGRLRLEKAKEHYLARLRQEWAAEGAQSATITAEADASTTSNTPDKRIQMLAEKGGLKMFFPRLKKIKILPSKGTGKHKYSFQRVESLPLHQLQVCSYNEHSMNPESDGSNHNVLNVGNDTLSDGGICEKEVNIMNRVMQKLFENEDQIQMETEQTDKTQPVHVYKYAKKRPGNARIDMEKFNDSDDTEGSNNSEAAVENLDELPMAKNVAQDLIKGSDNIETVSPESDQVVKDLQDDANFSRGIIEKIARTKSHESTFMKDKFFNVKSGENDFRMNVQKRITPKNTIFQPVEGDAEYQPEDQEPEVKKRVRVRDTSCGPIQHEKARGNSNIDIGLEVKSNSDFKVQGNPEYQPEVHKPDVRKRVRVGDTGCGPIQHEEARGNSNINIGVEVKSNTDFKVQDSDRVSQLQGDTHSWVQKASWKDLVGETGRFSFSLSSIIGGISYSSSAVKSNASETDQTANNDSLEDGTEEVNRKMSKRSGNNGIQEGLQCSNEVSQLFRRQAIKPPCFEPEDKPEHVGEMKIMSDAVEGPKENTTEIQRQDKRCKEDKDLQLYTPNKISSSTCTFMRSEDAEDEWLKSKEVVRGYAKARRKMALKNIKMLGVDPARRH*

Protein Length: 703

Fln nts: AAATTGCAGTCCATATCCATATATAGGTGCCAAATTTGTAAGTGCTTGAACTCATGTCTTCTGTGCACTCGAAAACCTAAAACCGGTTTTCCCAATTGGTACTTGACGAGAAATAACCCTGAGATCAAGATCAGAGCACATTGTTGCACTGTTGATCCAGCCATTATTAATAGA_-_ATGAATGATCACCGGGACTACACAAGAGGTGGAGGAGCAATAGAAAATCCCAACTCAGATGGGTGCTCATTGAAAAGCAGGATCTTTGTTGGTGGGTTGGGAGCTTCAGTCACGCCCAATGATTTGGAGGCAACATTTTCCTCACTGGGTCGGGTGCATGGCGTGGAAATCATCCGATCAAATGATCGTAACTTCGGTTATATGGATTTTGAACCATTCTCAGACAAGGCTCTCAGCAAGCTTTTCAGCTCGTATAATGGATGCGTGTGGAAAGGAGGGCGATTGAGACTGGAAAAGGCCAAAGAACATTATCTAGCGCGGTTGCGTCAGGAATGGGCTGCAGAAGGTGCACAATCAGCAACCATCACTGCTGAAGCTGATGCAAGCACAACCTCCAATACACCCGATAAGAGAATACAAATGTTAGCAGAGAAAGGTGGATTAAAGATGTTTTTCCCAAGACTGAAGAAGATCAAGATTTTGCCAAGCAAGGGAACGGGTAAACATAAGTACAGTTTTCAGCGTGTTGAAAGTCTGCCACTGCATCAACTTCAGGTTTGTAGCTACAATGAGCACAGCATGAATCCTGAAAGTGATGGAAGTAATCATAACGTTCTAAATGTGGGTAATGATACGCTTTCCGATGGAGGCATATGTGAAAAAGAGGTTAATATCATGAATAGAGTTATGCAAAAACTGTTTGAAAATGAAGACCAAATACAGATGGAAACAGAACAGACTGACAAGACTCAGCCTGTACATGTTTATAAATATGCAAAGAAAAGACCAGGCAATGCTAGAATAGACATGGAAAAGTTTAATGACTCAGATGATACTGAAGGGTCCAATAATAGTGAAGCTGCTGTTGAAAATTTAGATGAGCTTCCTATGGCTAAAAATGTTGCACAAGATTTGATAAAGGGATCAGATAATATAGAGACAGTAAGCCCCGAGTCAGATCAAGTTGTCAAGGATTTGCAGGATGATGCGAATTTTTCTAGGGGAATCATAGAAAAAATTGCAAGAACAAAGTCACATGAGTCAACATTCATGAAAGATAAATTCTTCAACGTGAAATCAGGGGAGAATGATTTTAGAATGAATGTTCAGAAGAGAATTACCCCAAAAAATACAATTTTTCAACCTGTGGAAGGGGATGCTGAATACCAACCTGAAGATCAGGAACCAGAGGTGAAAAAAAGGGTTAGGGTCAGGGACACCAGCTGTGGTCCAATCCAGCATGAGAAGGCTAGGGGCAACTCAAACATTGACATTGGATTGGAGGTGAAATCTAACAGTGACTTCAAAGTTCAGGGGAATCCTGAATACCAACCTGAAGTGCACAAACCAGATGTGAGGAAAAGGGTTAGAGTTGGAGACACCGGCTGTGGTCCAATCCAGCACGAGGAGGCCCGGGGCAACTCAAACATCAACATTGGAGTAGAGGTGAAGTCTAACACTGATTTCAAAGTGCAGGACAGTGATAGAGTATCACAATTACAAGGTGATACTCACTCCTGGGTACAGAAGGCTTCTTGGAAAGATCTGGTTGGTGAAACAGGGAGATTTTCCTTTTCACTTTCTAGCATTATAGGAGGCATCTCTTATTCTTCATCTGCTGTAAAATCCAACGCGAGTGAAACTGATCAAACAGCCAATAACGACTCTCTAGAGGATGGTACTGAGGAAGTAAACAGAAAAATGTCAAAGAGGAGTGGAAATAATGGGATTCAAGAGGGGCTTCAGTGCTCAAATGAAGTTTCACAATTATTCAGAAGGCAAGCCATTAAGCCTCCATGTTTTGAGCCAGAGGACAAGCCTGAACATGTTGGTGAGATGAAAATTATGTCTGATGCAGTAGAAGGACCCAAGGAGAATACAACAGAAATCCAAAGGCAGGATAAAAGATGCAAAGAAGATAAAGATTTACAGCTGTATACACCAAACAAAATTTCTTCTTCAACCTGTACATTTATGAGATCTGAAGATGCAGAAGATGAATGGCTCAAGTCCAAGGAAGTTGTTCGGGGTTATGCTAAGGCTCGTAGGAAAATGGCCCTAAAAAATATAAAGATGTTAGGAGTAGATCCTGCAAGAAGGCATTGATATCTGGAGCTGTATGTGTAGTACTTTCTTATTGACACAGCCCTTGGAATTTGAAAAATTGTACAAGCAGATTGCTCTTGTATTCCAATTTGAGCTGCCAAATTGTCTTCCTTAGTGTTTTTCCTCCTGTTATTTGAGAAAGGAATCGTTTATTTTCATTATCGTTTGTTTTATTTTATTGAAATTCACCT

Fln Alignment:

Contig27362___TRGGGAIENPNSDGCSLKSRIFVGGLGASVTPNDLEATFSSLGRVHGVEIIRSNDRNFGYMDFEPFSDKALSKLFSSYNGCVWKGGRLRLEKAKEHYLARLRQEWAAEGAQSATITAEADASTTSNTPDKRIQMLAEKG-GLKMFFPRLKKIKILPSKGTGKHKYSFQRVESLPLHQLQVCSYNEHSMNPESDGSNH-NVLNVGNDTLSDGGICEKEVNIMNRVMQKLFENEDQIQMETEQTDKTQPVHVYKYAKKRPGNARIDMEKFNDSDDTEGSNNSEAAVENLDELPMAKNVAQDLIKGSDNIETVSPESDQVVKDLQDDANFSRGIIEKIARTKSHESTFMKDKFFNVKSGENDFRMNVQKRITPKNTIFQPVEGDAEYQPEDQEPEVKKRVRVRDTSCGPIQHEKARGNSNIDIG--LEVKSNSD--------FKVQGNPEYQPEVHKPDVRKRVRVGDTGCGPIQHEEARGNSNINIGVEVKSNTDFKVQDSDRVSQLQGDTHSWVQKASWKDLVGETGRXXXXXXXXXXXXXXXXXXXXXXXXETDQTANNDSLEDGTEEVNRKMSKRSGNNGIQEGLQCSNEVSQLFRRQAIKPPCFEPEDKPEHVGEMKIMSDAVEGPKENTTEIQRQDKRCKEDKDLQLYTPNKIS-SSTCTFMRSEDAEDEWLKSKEVVRGYAKARRK
C5XUI8_______________TAGEGGVGGDNSAGALL--RIFVGGLAESVGAADLEALFASAGRVAGVEFVRTNGRSFAYVDFHCPNDKALAKLFSTYNGCKWKGGKLRLEKAKEHYLTRLKREWEEDAAAAA--SKEAALKDNAENQKPKLEKAALEGMKINIYFPKLRKMKALPLKGTGKHKYSFRHIE-VPSYPIHFCDCEEHCGPPEAANDEYASVLN--------AAAYEKERNIMNSVMNKLFEKEN------EHLDSCE-------VGKFDGHTD-TIEPSNAVSDMQIEETGEGPKEDLDNLPM---------------EETEESSDE---DLDDD------LVINIAPRKSNKSAV----------GANMEKQEVNK------------DSQLQKRPRIEEPSLPKKRQKSEASSEPIKRNGEHVSDTRTTGKTLPLKSEASQNEQKTLGLKGKGTYEFSSALPK----DKSFTGSQGIMALASSSTKNESAQNIG-----------------STEPRKGYSWTQKSAWRDLVGGMG---------------------STSFSISQVLPNNNPAPAL-HLNVTESERS-SKSLEATTQLSSE-----------------QRLPSSMGMLS------TGTTDESTDHAIGGEPKESNKPQKVRVVPKITISEVCPFMRNTESQKQWSKAKKVITGFTKKRNE

SNPs (tot: 34)

Position	A %	C %	G %	T %	Probability
1419			66	33	0.997452
1492	33		66		1.0
1567		80		20	0.995493
1593	14	85			0.993533
1739		12	87		0.992554
1755	12			87	0.992554
1757		87	12		0.992554
1758			12	87	0.992554
1759	87		12		0.992554
1806		87		12	0.992554
1807	12		87		0.992554
1811			87	12	0.992554
1824	85		14		0.993533
1846		20	80		0.995493
1848			80	20	0.995493
1849			80	20	0.995493
1889	11		88		0.923564
1893	88			11	0.923564
1923		44		44	1.0
1924	11			88	0.923564
1928	88			11	0.923564
1931	50		50		1.0
1972		10		90	0.90298
1975		10		90	0.90298
1976			10	90	0.90298
1984			90	10	0.90298
1985	90			10	0.90298
1990	90			10	0.90298
1991	90		10		0.90298
1992			90	10	0.90298
1993		70		30	1.0
1996	10		90		0.90298
2090	42	57			1.0
2318		75		25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain