SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene27316

Length: 1092 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene27316

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Auxin response factor n=1 Tax=Dimocarpus longan RepID=D0EZH0_9ROSI	-	-	1.0e-36	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	33%
Sma3	Auxin response factor 1	-	-	7.431e-14	-

Source	Gene names
Sma3	ARF1; ARF11; ARF12; ARF18; ARF19; ARF2; ARF23; ARF24; ARF4; ARF5; ARF6; ARF7; ARF7A; ARF8; ARF9; At1g30330; At1g59750; At2g46530; At3g61830; At5g62000; CsARF1; F11C10.34; F13A10.6; F15G16.220; F23H11.7; GSVIVT00006185001; GSVIVT00006721001; GSVIVT00008630

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	protein dimerization activity	GO:0046983	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	negative regulation of cell proliferation	GO:0008285	Biological Process	-
Sma3	response to hormone stimulus	GO:0009725	Biological Process	-
Sma3	auxin mediated signaling pathway	GO:0009734	Biological Process	-
Sma3	flower development	GO:0009908	Biological Process	-
Sma3	positive regulation of flower development	GO:0009911	Biological Process	-
Sma3	fruit dehiscence	GO:0010047	Biological Process	-
Sma3	leaf senescence	GO:0010150	Biological Process	-
Sma3	floral organ abscission	GO:0010227	Biological Process	-
Sma3		GO:0016481	Biological Process	-
Sma3	negative regulation of transcription, DNA-dependent	GO:0045892	Biological Process	-
Sma3	ovule development	GO:0048481	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Smr protein/MutS2 C-terminal	IPR002625	-	-
Sma3	AUX/IAA protein	IPR003311	-	-
Sma3	B3 DNA binding domain	IPR003340	-	-
Sma3	Protein of unknown function DUF482	IPR007434	-	-
Sma3	Auxin response factor	IPR010525	-	-
Sma3	Aux/IAA-ARF-dimerisation	IPR011525	-	-
Sma3	Domain of unknown function DUF1771	IPR013899	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G59750.1	ARF1 auxin response factor 1 chr1:21980414-21984193 FORWARD LENGTH=665	3.0e-37	53%
RefSeq	Arabidopsis thaliana	NP_176184.1	auxin response factor 1 [Arabidopsis thaliana]	4.0e-37	53%
RefSeq	Populus trichocarpa	XP_002322300.1	predicted protein [Populus trichocarpa]	1.0e-37	47%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LRW7

Fln msg: Overlapping hits, possible frame ERROR between 602 and 595, Unexpected STOP codon at 3' end. Distance to subject end: 579 aas, your sequence is shorter than subject: 201 - 920

Fln protein: MPNSVCNYSLFSPEGSRERFDAAIPEAKNGRAYKPQEAPQVNVIAGRPSITVSGVSESLLYEELWHACAGPFVTLPRIGERAFHFPQGHIEQVDASTNQGVDKHMPLYNMPSKILCHVIDVQSQAEPETDEVFLQITLFP*ADKNEPSHDLGTTTPQPRKSNVHSxxxxTLTASDTSTHGGLKPRHACLWLGISVLKATL*

Protein Length: 202

Fln nts: TTTGGTGATGCCAGCTACATCGCCATGCCAGCTACATCGCCGGAGGGCTGTTGTCACCTACGGTCTGTAATTATGATGTACCAGAGATCGGTGATCTA_-_ATGCCCAATTCGGTCTGTAACTATTCTTTGTTTTCTCCTGAGGGTTCACGTGAGCGGTTTGATGCTGCCATACCTGAAGCAAAGAATGGAAGGGCATACAAACCCCAGGAAGCGCCGCAAGTTAACGTCATCGCGGGACGTCCTTCCATCACAGTTTCAGGTGTCAGTGAATCTCTTCTTTATGAAGAGCTATGGCATGCATGTGCTGGTCCATTTGTTACTTTGCCTCGTATTGGGGAGAGAGCTTTTCACTTTCCTCAAGGCCACATAGAGCAGGTTGATGCATCAACAAACCAAGGGGTTGATAAGCATATGCCACTGTATAATATGCCTTCTAAGATTCTTTGCCATGTGATCGATGTGCAATCTCAAGCGGAACCTGAGACAGATGAAGTATTTCTGCAAATCACTTTATTTCCATAGGCAGATAAAAATGAGCCCTCTCATGACTTAGGGACAACTACCCCTCAGCCTCGTAAGAGTAATGTTCATTCAxxxxxxxxxxxxACTCTTACTGCTTCTGATACAAGCACTCATGGAGGACTAAAACCAAGACATGCATGCCTCTGGCTTGGAATCTCAGTATTAAAGGCAACATTATGATGACAAAGGGAAGTGGATTAATAGTGAAGAGGGCATTCCTTATGTAGGGTTGGGGTCAGAGCTGGGAGTGCAAGAAATTAAGGGCAGGTTTGAGGAAGATCCACCAACAATTGAACACTGTTAAAGAGGCATTTGGAGACCATCCTGCAATCAAAACCAATGCCATCAACATCAAGTAGCAGATCCTTTTCAGCTACAGGAAATTGCTGGAGCACCAGATTCTTGAGGCTTCTGTTGTAAGGAATTTTGGAGAACAAGATATAAAATGGATTTTTTTCCCAAATAGTTAGGTTTGCTAAGTATCATCAACAAATGAGACTAGGTTGATACTTGTAAATTAAATTTTGCATTTTTACAGATTAATCAATGTGGCTACGGAGATCACCTTGAAAT

Fln Alignment:

Contig27316___ELWHACAGPFVTLPRIGERAFHFPQGHIEQV------------------------------------DASTNQGVDKHMPLYNMPSKILCHVIDVQSQAEPETDEVFLQITLFP*ADKNEPSHDLGTTTPQPRKSNVHSxxxTLTASDTSTHGGLK-PRHA
B8LRW7_______________ELWHACAGPLISLPPKGSRVVYFPQGHLEQIADNELHKVGRGSFLNINQAVTPMAEEASSAASLNIPPSSISQAVNQQMLSYKLPPQILCRVLNVNLHADQEMDEVYAQLTLVPDSEKSEKC--IEEQLPVPPSSTPHMxxxTLTASDTSTHGGFSVPRRA

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
11		66		33	0.997452
13	66	33			0.997452
14			66	33	0.997452
18	66		33		0.997452
20	66			33	0.997452
21			33	66	0.997452
24	33	66			0.997452
61	83		16		0.994512
142		75	25		0.996473
262	50		50		1.0
263	25			75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain