SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene27274

Length: 3224 nt

UniGene Fasta

>sp_v3.0_unigene27274
CACAGAGGTTAAAGCTGAGCCCAACTATTATCCGCCCTCGCGTGTCTGGCATTTGTACACTGAGCTTCGCTTCTCTCCTCTGCTCTGCCCGTGCGTATGTTTTTAGTGTTTTTAGTGCAGAGGAAGGACTGAAGCCGAAGGTGCCTTTCAATTCACAGGTCTTTGTTATTCTTTTGAGATCTCGAGTGCATGGAGGGACAAATACGATCAGAAGCTCCGCGCGACGCCATTGTCGTCAGGTCCAGGGATCGATTCTTGCTGATCAAGTCATGAGAAACCAGGCATGGATTGTCATTGCACAGGTGGTTGGGTAAATGCTACACCAATTTGACCTGGTGGATGCCTTGGCTCAAAAGTGTGCTGTGCAAAATGTTGTGTACCTGTTCAAGGGAACAAGTTGGGGTAGAGGAAGGTGGTCTCTCCAAAGATGTGATGGCTTTCAAAGAGGTCTCTGCCAATGGACTCTCTGCTAAAACAACTGAGGTTGAAACGAAACTTGATGAAGGAAACATTGAAGAAGCCGAGTCTTCACTCCGTGAAGCATTATCTCTAAATTATGAGGAGGCTAGAGCTCTATTAGGAAGATTAGAGTATCAAAGAGGAAACATTGAGGCTGCCTTGCAAGTATTCGAGGGAATTGAATTACATGCTGTAAAACAGCGCTTACGGTCGTCTATTTCAGAAAAAAGCTCACTCTAAACGAGGTCGATCACGGCAAGAACTATCACAATCAGTTTCACTACATGCAGCCAGCCTATTGCTTGAGGCGATATACTTGAAGGCATTGTCACTGCAAAAGCTTGGTCGTCTAACAGAAGCTGCTCAAGAATGCAAAAGTGTTCTAGACACAATTGAAAACGCTTTTCCTCAGGGCATGCCTGAGTTGTTGGGAGACAACAAACTGCAAGAGACAGTTGGCAAGGCTGTTGAACTTCTACCAGAACTGTGGAAGCAAGCAGGTCTCCAGCATGAAGCAATGGCTGCATATAGACGGGCTCTCCTTAGTCAATGGCACCTTGATGCAGATTGTTGCGCAAGAATACAAAAGGAATTTGCTATATTGTTACTTTATGGGGGGGTTGAGGCAGGTGCACCTAGTTTAGCTGCTCAGATTGATGGTTCATTTGTCCCAAAGAATAATACAGAGGAGGCTATTCTATTGCTTATGATTCTCCTAAGAAAATGTTGTCTACGCAAAATTGCGTGGGATCCTGCAGTCATGGATCACCTTACTTTTGCACTTTCTCTTTCTGGACAATCCCTTGTAATAGCAAAGCAAGTTGAAGAGGTCTTACCTGGAATTTATGCAAGGTCTGATCGATGGAATGATCTGGCTCTTTGTTATAGTGGTGCGAGGCAAAATCTGGTTGCGTTAAATCTTCTAAGAAAGTCATTGAGCAAATCAGAAAAACCAAATGATTTGTCAGCATTGTTATTAGCAGCAAAGATTTGTACTGAAGATTTCCATCTTGCTGCTGAAGGAGTGGAATATGCAAGAAGAGCTGTGGAGAATGCCAAAGGGGAGTTTGAACACTTAAAGGGCATTGCATATCGTTTATTAGGTCTTGCATTGGAAAGGAAACTAAAGCTTCGTCTTCAGACTCAGAAAGAACCCGTCTGCACAGTGAAGCTTTGAAATTCTTAGAGGAAGCTATCATTTGGGAAAAACAAAACCCAGACTGGATCTTTGAATTGGGTCTTGAGTATGCTGAAAATCGTAATCTGAATCTGGCTCTTTGCTATGTAAAAGAATATCTGGACTTAACTGCTGGCTCACTATTGAAAGGATGGAGGCTTTTGGCACTAATTTTATCAGCTCAGAAACGTTATTCTGAAGCAGAAACTGTCCTTGATGCTGCTTTAGATGAAACAGGAAAATGGGAACAAGGAGTGTTGTTGAGAACAAAAGCAAAACTACAGATTGCACAGTCATCGCCAATGAATGCCATTGAAACATACAGGCTTCTTCTTGCTTTGGTTCAAGCACAAAGAAAGAGCTTTGGAGCTGGAAAATGCACTCCAAAGGTTGAAGGTGAAAGGGTTCTTGAAGTTGGAGTTTGGCAAGATTTGGCTCGTCTATATTCTGGTCTCTCTCGTTGGCGAGATGCTGAAATATGTTTGGAGAAGGCTAAAGCTTTAAAAATTTATTCTGCAGAGACATCACATGCAAAAGGAGTTCTATGTGAAGCGCGTAGTCAAACGCAGGAAGCACTAGCTGCTTATACTAATGCACTTTCTGTTGATCCAGACCATGTGCCTTCTAAAGTGTCTCTTGGGGCATTGTTGTGGCGAACTGGTGGCAAGTCCTTGCCAGTTGCTAGAGGTTTGTTGTCAGACGCATTACGGCTGGATCCTACAAACTATGTTGCCTGGTACTATTTAGCCATGGTTCATAAAGATGAGGGGAGAGCTTCAGACGCTGTTGATTGTTTCCAGGCAGCATGTATGCTTGAGGAGTCTGCTCCAATTGAGAAGTTTTCATCAGCTTGTTAAGCTCTGTATTGTGAAATAAACTACATTATTTAAATTTGTAAAATGTGATTCATTCAGAACAGTTCTATTTGGAGCTGTATCATGCAGCCCAAAGTTTTGAGGTAACCCACTTCACATTGATGTGATCTTGGAGCCTGATTGGTTGTCAGAGCTTCCATTGGTCGACTGGTGTAAGATTATGTAGAATATTTGTTAATGATAGATTTTGAATTCAAGCCAACTATCTCCCAATGATTTGATTGGCTGGTTGTGCAATAGATTGATGAGACTGCCTATAAAAGCTCCGATGTAAGTCATTACCACAAGTCCGTAGGCCCCTACAAAAATTTTCTTCCTAGTGATTAACTGGACAATGTATAATGTTGTCATATTTTATGATTGTTAGATGTCAAGGATTCACTGCTTTACTAATTGAAGTAGGTTTGTGAATCTCCTTCTCCATTGGAGGGAACATGCAGAGGTAAATACGCTGAAGCAGAACATTTCCATGTAAACTGATATGGCCGAAAAAATAGCATGGCTTAGTCCGTTGTTCCGTGGTCTAGTGGTGGAGATCTTGAGATGGCACATTTCCCCATTAACGACTCAGGTTCAAACCCTGAGAGGCATAGAGCCCTGTATTGTAAGTTAACCGAGTTTCATGAGATATCTATGCAGAGTTAGTTCAACAAAAAATTTGCATGGCTTAAAATCTTAGAGGATAGGATTTCGTTAGCTATAATTGTAACATT

Ace file of the UniGene sp_v3.0_unigene27274

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	O-linked n-acetylglucosamine transferase, ogt, putative n=1 Tax=Ricinus communis RepID=B9RLG2_RICCO	-	-	0.0	61%
FL-Next	tr=O-linked n-acetylglucosamine transferase, ogt, putative; Ricinus communis (Castor bean).	-	-	0.0	65%
Sma3	TPR Domain containing protein, expressed	-	-	1.052e-08	-

Source	Gene names
Sma3	AT4g28600; At1g27460; At2g43040; At4g28600; GSVIVT00004410001; GSVIVT00007300001; GSVIVT00014057001; GSVIVT00014960001; GSVIVT00020311001; GSVIVT00022938001; GSVIVT00028547001; GSVIVT00032350001; GSVIVT00032383001; LOC_Os03g04500; LOC_Os03g10350; LOC_Os10

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	DNA photolyase activity	GO:0003913	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	calmodulin binding	GO:0005516	Molecular Function	-
Sma3	DNA repair	GO:0006281	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Tetratricopeptide TPR-1	IPR001440	-	-
Sma3	Cryptochrome/DNA photolyase, class 1	IPR002081	-	-
Sma3	SPOUT methyltransferase, predicted	IPR003742	-	-
Sma3	DNA photolyase, FAD-binding/Cryptochrome, C-terminal	IPR005101	-	-
Sma3	DNA photolyase, N-terminal	IPR006050	-	-
Sma3	Tetratricopeptide TPR-4	IPR011717	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Tetratricopeptide repeat-containing domain	IPR013026	-	-
Sma3	Tetratricopeptide TPR2	IPR013105	-	-
Sma3	Cryptochrome, DASH	IPR014133	-	-
Sma3	Rossmann-like alpha/beta/alpha sandwich fold	IPR014729	-	-
Sma3	Tetratricopeptide repeat	IPR019734	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G43040.1	NPG1 tetratricopeptide repeat (TPR)-containing protein chr2:17896049-17898524 REVERSE LENGTH=704	59%
RefSeq	Arabidopsis thaliana	NP_850382.1	tetratricopeptide repeat-containing protein [Arabidopsis thaliana]	59%
RefSeq	Populus trichocarpa	XP_002300857.1	predicted protein [Populus trichocarpa]	68%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: B9RLG2

Fln msg: Overlapping hits, possible frame ERROR between 687 and 677,

Fln protein: MPWLKSVLCKMLCTCSREQVGVEEGGLSKDVMAFKEVSANGLSAKTTEVETKLDEGNIEEAESSLREALSLNYEEARALLGRLEYQRGNIEAALQVFEGIELHAVKQRLRSSxxxxxAHSKRGRSRQELSQSVSLHAASLLLEAIYLKALSLQKLGRLTEAAQECKSVLDTIENAFPQGMPELLGDNKLQETVGKAVELLPELWKQAGLQHEAMAAYRRALLSQWHLDADCCARIQKEFAILLLYGGVEAGAPSLAAQIDGSFVPKNNTEEAILLLMILLRKCCLRKIAWDPAVMDHLTFALSLSGQSLVIAKQVEEVLPGIYARSDRWNDLALCYSGARQNLVALNLLRKSLSKSEKPNDLSALLLAAKICTEDFHLAAEGVEYARRAVENAKGEFEHLKGIAYRLLGLALERKLKLRLQTQKEPVCTVKL*NS*RKLSFGKNKTQTGSLNWVLSMLKIVI*IWLFAM*KNIWT*LLAHY*KDGGFWH*FYQLRNVILKQKLSLMLL*MKQENGNKECC*EQKQNYRLHSHRQ*MPLKHTGFFLLWFKHKERALELENALQRLKVKGFLKLEFGKIWLVYILVSLVGEMLKYVWRRLKL*KFILQRHHMQKEFYVKRVVKRRKH*LLILMHFLLIQTMCLLKCLLGHCCGELVASPCQLLEVCCQTHYGWILQTMLPGTI*PWFIKMRGELQTLLIVSRQHVCLRSLLQLRSFHQLVKLCIVK*

Protein Length: 726

Fln nts: CACAGAGGTTAAAGCTGAGCCCAACTATTATCCGCCCTCGCGTGTCTGGCATTTGTACACTGAGCTTCGCTTCTCTCCTCTGCTCTGCCCGTGCGTATGTTTTTAGTGTTTTTAGTGCAGAGGAAGGACTGAAGCCGAAGGTGCCTTTCAATTCACAGGTCTTTGTTATTCTTTTGAGATCTCGAGTGCATGGAGGGACAAATACGATCAGAAGCTCCGCGCGACGCCATTGTCGTCAGGTCCAGGGATCGATTCTTGCTGATCAAGTCATGAGAAACCAGGCATGGATTGTCATTGCACAGGTGGTTGGGTAAATGCTACACCAATTTGACCTGGTGG_-_ATGCCTTGGCTCAAAAGTGTGCTGTGCAAAATGTTGTGTACCTGTTCAAGGGAACAAGTTGGGGTAGAGGAAGGTGGTCTCTCCAAAGATGTGATGGCTTTCAAAGAGGTCTCTGCCAATGGACTCTCTGCTAAAACAACTGAGGTTGAAACGAAACTTGATGAAGGAAACATTGAAGAAGCCGAGTCTTCACTCCGTGAAGCATTATCTCTAAATTATGAGGAGGCTAGAGCTCTATTAGGAAGATTAGAGTATCAAAGAGGAAACATTGAGGCTGCCTTGCAAGTATTCGAGGGAATTGAATTACATGCTGTAAAACAGCGCTTACGGTCGTCTxxxxxxxxxxxxxxxGCTCACTCTAAACGAGGTCGATCACGGCAAGAACTATCACAATCAGTTTCACTACATGCAGCCAGCCTATTGCTTGAGGCGATATACTTGAAGGCATTGTCACTGCAAAAGCTTGGTCGTCTAACAGAAGCTGCTCAAGAATGCAAAAGTGTTCTAGACACAATTGAAAACGCTTTTCCTCAGGGCATGCCTGAGTTGTTGGGAGACAACAAACTGCAAGAGACAGTTGGCAAGGCTGTTGAACTTCTACCAGAACTGTGGAAGCAAGCAGGTCTCCAGCATGAAGCAATGGCTGCATATAGACGGGCTCTCCTTAGTCAATGGCACCTTGATGCAGATTGTTGCGCAAGAATACAAAAGGAATTTGCTATATTGTTACTTTATGGGGGGGTTGAGGCAGGTGCACCTAGTTTAGCTGCTCAGATTGATGGTTCATTTGTCCCAAAGAATAATACAGAGGAGGCTATTCTATTGCTTATGATTCTCCTAAGAAAATGTTGTCTACGCAAAATTGCGTGGGATCCTGCAGTCATGGATCACCTTACTTTTGCACTTTCTCTTTCTGGACAATCCCTTGTAATAGCAAAGCAAGTTGAAGAGGTCTTACCTGGAATTTATGCAAGGTCTGATCGATGGAATGATCTGGCTCTTTGTTATAGTGGTGCGAGGCAAAATCTGGTTGCGTTAAATCTTCTAAGAAAGTCATTGAGCAAATCAGAAAAACCAAATGATTTGTCAGCATTGTTATTAGCAGCAAAGATTTGTACTGAAGATTTCCATCTTGCTGCTGAAGGAGTGGAATATGCAAGAAGAGCTGTGGAGAATGCCAAAGGGGAGTTTGAACACTTAAAGGGCATTGCATATCGTTTATTAGGTCTTGCATTGGAAAGGAAACTAAAGCTTCGTCTTCAGACTCAGAAAGAACCCGTCTGCACAGTGAAGCTTTGAAATTCTTAGAGGAAGCTATCATTTGGGAAAAACAAAACCCAGACTGGATCTTTGAATTGGGTCTTGAGTATGCTGAAAATCGTAATCTGAATCTGGCTCTTTGCTATGTAAAAGAATATCTGGACTTAACTGCTGGCTCACTATTGAAAGGATGGAGGCTTTTGGCACTAATTTTATCAGCTCAGAAACGTTATTCTGAAGCAGAAACTGTCCTTGATGCTGCTTTAGATGAAACAGGAAAATGGGAACAAGGAGTGTTGTTGAGAACAAAAGCAAAACTACAGATTGCACAGTCATCGCCAATGAATGCCATTGAAACATACAGGCTTCTTCTTGCTTTGGTTCAAGCACAAAGAAAGAGCTTTGGAGCTGGAAAATGCACTCCAAAGGTTGAAGGTGAAAGGGTTCTTGAAGTTGGAGTTTGGCAAGATTTGGCTCGTCTATATTCTGGTCTCTCTCGTTGGCGAGATGCTGAAATATGTTTGGAGAAGGCTAAAGCTTTAAAAATTTATTCTGCAGAGACATCACATGCAAAAGGAGTTCTATGTGAAGCGCGTAGTCAAACGCAGGAAGCACTAGCTGCTTATACTAATGCACTTTCTGTTGATCCAGACCATGTGCCTTCTAAAGTGTCTCTTGGGGCATTGTTGTGGCGAACTGGTGGCAAGTCCTTGCCAGTTGCTAGAGGTTTGTTGTCAGACGCATTACGGCTGGATCCTACAAACTATGTTGCCTGGTACTATTTAGCCATGGTTCATAAAGATGAGGGGAGAGCTTCAGACGCTGTTGATTGTTTCCAGGCAGCATGTATGCTTGAGGAGTCTGCTCCAATTGAGAAGTTTTCATCAGCTTGTTAAGCTCTGTATTGTGAAATAA___ACTACATTATTTAAATTTGTAAAATGTGATTCATTCAGAACAGTTCTATTTGGAGCTGTATCATGCAGCCCAAAGTTTTGAGGTAACCCACTTCACATTGATGTGATCTTGGAGCCTGATTGGTTGTCAGAGCTTCCATTGGTCGACTGGTGTAAGATTATGTAGAATATTTGTTAATGATAGATTTTGAATTCAAGCCAACTATCTCCCAATGATTTGATTGGCTGGTTGTGCAATAGATTGATGAGACTGCCTATAAAAGCTCCGATGTAAGTCATTACCACAAGTCCGTAGGCCCCTACAAAAATTTTCTTCCTAGTGATTAACTGGACAATGTATAATGTTGTCATATTTTATGATTGTTAGATGTCAAGGATTCACTGCTTTACTAATTGAAGTAGGTTTGTGAATCTCCTTCTCCATTGGAGGGAACATGCAGAGGTAAATACGCTGAAGCAGAACATTTCCATGTAAACTGATATGGCCGAAAAAATAGCATGGCTTAGTCCGTTGTTCCGTGGTCTAGTGGTGGAGATCTTGAGATGGCACATTTCCCCATTAACGACTCAGGTTCAAACCCTGAGAGGCATAGAGCCCTGTATTGTAAGTTAACCGAGTTTCATGAGATATCTATGCAGAGTTAGTTCAACAAAAAATTTGCATGGCTTAAAATCTTAGAGGATAGGATTTCGTTAGCTATAATTGTAACATT

Fln Alignment:

Contig27274___EEGGLSKDVMAFKEVSANGLSAKTTEVETKLDEGNIXXXXXXXXXXXXXNYEEARALLGRLEYQRGNIEAALQVFEGIELHAVKQRLRSSxxxxAHSKRGRSRQELSQSVSLHAASLLLEAIYLKALSLQKLGRLTEAAQECKSVLDTIENAFPQGMPELLGDNKLQETVGKAVELLPELWKQAGLQHEAMAAYRRALLSQWHLDADCCARIQKEFAILLLYGGVEAGAPSLAAQIDGSFVPKNNTEEAXXXXXXXXXXXXXXXIAWDPAVMDHLTFALSLSGQSLVIAKQVEEVLPGIYARSDRWNDLALCYSGARQNLVALNLLRKSLSKSEKPNDLSALLLAAKICTEDFHLAAEGVEYARRAVENAKGEFEHLKGIA
B9RLG2_______________EEFGEYEEQTLVREVCANGICMKTTEVEAKLDEGNIQEAESSLREGLSLNFEEARALLGRLEYQRGNVEGALRVFDGIDLQAAIERLQPAxxxxQSSKKGRPRSDSQHAVSQHAASLVLEAIYLKAKSLQKLGRINDAAKECKSVLDAVEKIFHQGIPDAQVDNRLQDTVSQAVELLPELWKQVGCYDEAMSAYRRALLSQWNLDDECCARIQKGFAVFLLHSGVEAGPLSLAAHIDGSYVPKHNLEEAVLLLMILIRKSYLGKTKWDSSVVEHLTFALSLCSQTSILAKQLEEIMPGLFHRVDRWNTLALCYCGAGKHDVAINLLRKSLHKHERPDDLMALLLAAKICSEDSHLAAEGVGYAQRAISNSQGIDEHLKGVA

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
719	75		25		0.996473
735	14		85		0.999981
737			14	85	0.999981
960	11		88		0.923564
1223			90	10	0.90298
1261	11	88			0.923564
1263	11	88			0.923564
1350	16		83		0.994512
1492	80		20		0.995493
1549		85		14	0.993533
1725		80		20	0.995493
2219		88	12		1.0
2220			8	92	0.999718
2977		75		25	0.996473
2978	75		25		0.996473
3024		60		40	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain