SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene27202

Length: 341 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene27202
ATGGCATTGCCACTGGCTTGAAGAAGGGCCACCAAGTGACCAAGCGCAAGGTCTCCGTCAAGCCTTCCAACCAGAGGAGACTCGGCAAGAGGACAAAGTTCGTCAGGGATGTCATCCGTGAAGTTTCTGGCTATGCCCCCTATGAGAGGCGCATTATTGAGTTGATGAGGGTCGGTTTGGACAAGCGTGCCCTCAAGCTCGCCAAGAGAAAGATTGGTACACACCGCAGAGCCCTCAAGAAGAGGGAAGAGATGGGTAACGTCGTTGCCGCCCAGAGACTTGCCTCTTCCAAGAAGGAAGAACATTAAATGTTTTGATTGGTTGCTTGCTTTCCCCTGTCT

Ace file of the UniGene sp_v3.0_unigene27202 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	60S ribosomal protein L36 n=1 Tax=Monosiga brevicollis RepID=A9UZG6_MONBE	-	-	5.0e-21	51%
FL-Next	sp=60S ribosomal protein L36; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	57%
Sma3	60S ribosomal protein L36	-	-	0.0	-

Source	Gene names
Sma3	At2g37600; At3g53740; At5g02450; CHLREDRAFT_195597; F13M22.10; F5K20_40; GSVIVT00026857001; MICPUCDRAFT_31782; MICPUN_114038; OJ1281_H05.4; OSTLU_119615; Os01g0840700; Os05g0459900; OsI_04390; OsI_20226; OsJ_04027; OsJ_18810; Ot02g01800; P0408C03.28; PHYP

Source	GOs	Term	Type	Identity
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	cytosolic large ribosomal subunit	GO:0022625	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosomal protein L36e	IPR000509	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G02450.1	Ribosomal protein L36e family protein chr5:533501-534394 FORWARD LENGTH=108	6.0e-24	54%
RefSeq	Arabidopsis thaliana	NP_195865.1	60S ribosomal protein L36-3 [Arabidopsis thaliana]	8.0e-24	54%
RefSeq	Populus trichocarpa	XP_002305746.1	predicted protein [Populus trichocarpa]	1.0e-25	55%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NL37

Fln msg: atg_distance in limit (1-15): atg_distance = 9, W2: There is no M at the beginning,

Fln protein: GIATGLKKGHQVTKRKVSVKPSNQRRLGKRTKFVRDVIREVSGYAPYERRIIELMRVGLDKRALKLAKRKIGTHRRALKKREEMGNVVAAQRLASSKKEEH*

Protein Length: 103

Fln nts: _-_ATGGCATTGCCACTGGCTTGAAGAAGGGCCACCAAGTGACCAAGCGCAAGGTCTCCGTCAAGCCTTCCAACCAGAGGAGACTCGGCAAGAGGACAAAGTTCGTCAGGGATGTCATCCGTGAAGTTTCTGGCTATGCCCCCTATGAGAGGCGCATTATTGAGTTGATGAGGGTCGGTTTGGACAAGCGTGCCCTCAAGCTCGCCAAGAGAAAGATTGGTACACACCGCAGAGCCCTCAAGAAGAGGGAAGAGATGGGTAACGTCGTTGCCGCCCAGAGACTTGCCTCTTCCAAGAAGGAAGAACATTAAATGTTTTGATTGGTTGCTTGCTTTCCCCTGTCT

Fln Alignment:

Contig27202___GIATGLKKGHQVTKRKVSVKPS-NQRRLGKRTKFVRDVIREVSGYAPYERRIIELMRVGLDXXXXXXXXXKIGTHRRALKKREEMGNVVAAQRLASSKKEE
A9NL37_______________GIFVGLNRGHIVTKRELAPRPSANKGKRSKRTDFVRKLIREVAGFAPYEKRITELLKVGKDKRALKVAKKKLGTHKRAKKKREEMSNVLRKMRAAGTTEKK

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
108		25	75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain