SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene26915

Length: 1326 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene26915

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[J] COG0093 Ribosomal protein L14	-	-	6.0e-28	55%
FL-Next	sp=50S ribosomal protein L14, chloroplastic; Abies firma (Momi fir). Plastid; Chloroplast.	-	-	0.0	50%
Sma3	50S ribosomal protein L14, chloroplastic	-	-	0.0	-

Source	Gene names
Sma3	At1g17560; At5g46160; GSVIVT00028331001; Grc000091; HLL; HLP; Heak293_Cp136; LOC_Os12g42180; MicpuC_chl23; Os12g0616200; OsI_38015; OsI_39124; OtCpg00370; PHYPADRAFT_100442; POPTRDRAFT_657984; RCOM_0605290; WHLP; rpl14;

Source	GOs	Term	Type	Identity
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	plastid	GO:0009536	Cellular Component	-
Sma3	cyanelle	GO:0009842	Cellular Component	-
Sma3	large ribosomal subunit	GO:0015934	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	rRNA binding	GO:0019843	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	translation	GO:0006412	Biological Process	-
Sma3	signal transduction	GO:0007165	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein L14b/L23e	IPR000218	-	-
Sma3	PAC motif	IPR001610	-	-
Sma3	Ribosomal protein L14, bacterial-type	IPR005745	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G46160.1	Ribosomal protein L14p/L23e family protein chr5:18711456-18712341 REVERSE LENGTH=173	60%
RefSeq	Arabidopsis thaliana	NP_199428.3	large subunit ribosomal protein L14 [Arabidopsis thaliana]	61%
RefSeq	Populus trichocarpa	XP_002315564.1	predicted protein [Populus trichocarpa]	81%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C3VZE1

Fln msg: your sequence is longer than subject: 189 - 122

Fln protein: MASSLMKLTRSVRSVVGGFKAPSTADGLSLGLMGHYGNHLWGSSSIFLESMGFPIGGLHQVLSQQQRTFIQMRTSLKVVDNSGAKRVMCIQALKGRKGARLGDTIIASVKEAHPRGKVKKGEVVYCVVVRAAMQRQRCDGSEIRFDDNAVVLVNKQGEPIGTRVFGPVPHELRRKKLVKILTLAQHVA*

Protein Length: 190

Fln nts: GGTTGAACGCGCTCCTTAACTTTCATGTTATGACAGGTTGAACGCACTTTAGGGACAGTGATCAATGATATAGTGGGCAGTGGCGACGACATCCTCTCTTGGTTGTGTGGCAATGATATAGCAGGGCTGTGGCGATGATATAGCGGCGATCAATGAGTTTTGGTTTTATAAACATTTGGAGTGCCGTTGCAATGGTTTGAGAGATTATTACAGTACGCTGCCAAAGAAGCCATTTCCAAGCCGTTCATTGGAGTCAAAGAAGCCATTTCCAAGCCATTCATAGGAATCACTGATGAGCTCGGCTTGTAAACACTAGGGTTTAGGGTTTAACCAGTTGTGTTGGAATTAGAATCGCAGCA_-_ATGGCATCTTCACTAATGAAACTTACTCGTTCTGTCCGATCTGTAGTCGGTGGATTCAAAGCTCCATCTACTGCAGATGGACTTAGCTTAGGATTAATGGGACATTATGGAAACCATTTGTGGGGCAGCTCATCAATCTTTCTTGAATCAATGGGGTTTCCAATTGGTGGATTACATCAAGTTTTATCTCAGCAACAAAGAACATTTATACAAATGAGAACCAGTCTTAAAGTTGTTGATAACTCGGGGGCAAAGCGAGTAATGTGTATCCAGGCTCTCAAGGGGAGGAAAGGAGCACGCCTAGGAGATACAATTATTGCATCTGTGAAGGAAGCACATCCTCGTGGGAAAGTTAAGAAGGGTGAAGTAGTATATTGTGTCGTCGTGCGTGCTGCTATGCAGCGACAAAGATGTGATGGAAGTGAGATCAGGTTTGATGACAATGCTGTTGTTCTTGTGAATAAACAAGGAGAGCCTATTGGAACCCGAGTATTTGGTCCTGTACCACATGAACTCAGGAGAAAAAAGCTTGTAAAAATTTTAACCTTAGCACAACATGTCGCTTGA___ATCTTGATGCACCATTACATTTTTCCAGTGCTTTTGACAGTAAACAACATCTCTTTTTGCAAGTTGCAGTTTATAGAGGTGCTGCTGAGTTTTGTAGACATATAATCCTATTGTATGGCTTCTGTCGATACATCGCCATTAATTTTGATTCTGGGTTACTCTCCAAATTGATGCAGTTCATAGAGGTGCAAACCAGTTTTAAAAAATTGTACTGTATGGACATGCTTCATATGTTTTGATGCATGGAAAATTTGAGTTCATTCTGGTTTGTGATAAAACAATAAGGTTCACTGGTTTTTCTTCATCATTGGAAATGTCTATTTGTATTCTTTTATTTCTAAATTTTAACCTTAAGAAATGGCTTGGAAGCCTTGTAACGAGGATGAATAATTCTTTGGAG

Fln Alignment:

Contig26915___IQMRTSLKVVDNSGAKRVMCIQAL--KGRKGARLGDTIIASVKEAHPRGXXXXXXXXXXXXXRAAMQRQRCDGSEIRFDDNAVVLVNKQGEPIGTRVFGPVPHELRRKKLVKILTLAQHV
C3VZE1_______________IQSQTYLNIADNSGARKIMCIRVLGASNRKSAHIGDVIIAIIKEAVPNMPLEKSEVVRAVVVRTCKELERDNGMMIRSDDNAAVVIDQEGNPKGTRVFGPVAQELRQLNFTKIVSLAPEV

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
434	75		8		0.99999
780	85		14		0.993533
791		11	88		0.923564
794			11	88	0.923564
796	88	11			0.923564
799	88			11	0.923564
802	88	11			0.923564
806	10			90	0.90298
908	85		14		0.993533
1123		14		85	0.993533
1132	85			14	0.993533
1134	14			85	0.993533
1141	12			87	0.992554
1163			12	87	0.992554
1200		20		80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain