SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene26902

Length: 869 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene26902

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Class III peroxidase 3 n=6 Tax=Poaceae RepID=Q9LI45_ORYSJ	-	-	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	63%
Sma3	Peroxidase	-	-	-

Source	ECs	Term	Type	e value	Identity
Sma3	Peroxidase.	EC:1.11.1.7	-	0.0	-

Source	KEGGs	Term	Identity
Sma3	Phenylalanine metabolism	00360	%
Sma3	Methane metabolism	00680	%
Sma3	Phenylpropanoid biosynthesis	00940	%
Sma3	Biosynthesis of phenylpropanoids	01061	%
Sma3	Metabolic pathways	01100	%
Sma3	Biosynthesis of secondary metabolites	01110	%

Source	Gene names
Sma3	AP22.54; AoPOX1; At1g14550; At1g44970; At2g18140; At2g18150; At2g35380; At3g50990; At4g36430; At5g05340; At5g06720; At5g06730; At5g58390; At5g58400; At5g66390; C7A10.930; DIDI 6G-3B; F14L17.33; F24M12.30; F27F5.6; F8D23.7; F8D23.8; GSVIVT00014550001; GSVI

Source	GOs	Term	Type	Identity
Sma3	extracellular region	GO:0005576	Cellular Component	-
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	peroxidase activity	GO:0004601	Molecular Function	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	calcium ion binding	GO:0005509	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	heme binding	GO:0020037	Molecular Function	-
Sma3	response to oxidative stress	GO:0006979	Biological Process	-
Sma3	hydrogen peroxide catabolic process	GO:0042744	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	Plant peroxidase	IPR000823	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Haem peroxidase, plant/fungal/bacterial	IPR002016	-	-
Sma3	GCN5-like 1	IPR009395	-	-
Sma3	Thymidylate kinase, conserved site	IPR018095	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-
Sma3	Peroxidase, active site	IPR019794	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G36430.1	Peroxidase superfamily protein chr4:17204648-17205917 REVERSE LENGTH=331	55%
RefSeq	Arabidopsis thaliana	NP_195361.1	peroxidase 49 [Arabidopsis thaliana]	55%
RefSeq	Populus trichocarpa	XP_002300745.1	predicted protein, partial [Populus trichocarpa]	58%

Full-Lengther Next Prediction

SNPs (tot: 24)

Position	A %	C %	G %	T %	Probability
117	50	50			1.0
145		80		20	0.995493
190	16	83			0.994512
193	16			83	0.994512
203		50	50		1.0
320	70		30		1.0
361		60		40	1.0
362		90		10	0.90298
432		14		85	0.993533
447	85		14		0.993533
464		85	14		0.993533
514		75		25	0.996473
694	25			75	0.996473
697		75	25		0.996473
699	75		25		0.996473
700			25	75	0.996473
701	75	25			0.996473
702	75			25	0.996473
708	75		25		0.996473
709		75	25		0.996473
711		75		25	0.996473
712	75		25		0.996473
716		25		75	0.996473
717	25		75		0.996473

SSRs (tot: 1)

Start position	End position	Sequence	Length
560	572	GGA GGA GGA GGA G	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain