SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene26855

Length: 1625 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene26855 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[RTKL] COG0515 Serine/threonine protein kinase	-	-	7.00649e-43	37%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	83%
Sma3	Serine/threonine protein kinase, putative	-	-	2.156e-28	-

Source	ECs	Term	Type	e value	Identity
Sma3	Non-specific serine/threonine protein kinase.	EC:2.7.11.1	-	4.047e-18	-
Sma3	Protein kinase C.	EC:2.7.11.13	-	5.164e-07	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Phosphatidylinositol signaling system	04070		5.164e-07	%

Source	Gene names
Sma3	AGC1-10; AT4g26610; ATPK64; AcNPH1; Adi3; At1g16440; At1g53700; At1g79250; At2g26700; At2g34650; At2g36350; At2g44830; At3g12690; At3g14370; At3g27580; At3g44610; At3g52890; At4g26610; At5g03640; At5g40030; At5g47750; At5g55910; B1026E06.38; B1066D09.24;

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	cell surface	GO:0009986	Cellular Component	-
Sma3	two-component sensor activity	GO:0000155	Molecular Function	-
Sma3	protein kinase activity	GO:0004672	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	identical protein binding	GO:0042802	Molecular Function	-
Sma3	two-component signal transduction system (phosphorelay)	GO:0000160	Biological Process	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	auxin mediated signaling pathway	GO:0009734	Biological Process	-
Sma3	auxin polar transport	GO:0009926	Biological Process	-
Sma3	root development	GO:0048364	Biological Process	-
Sma3	root hair initiation	GO:0048766	Biological Process	-
Sma3	root hair elongation	GO:0048767	Biological Process	-
Sma3	cotyledon development	GO:0048825	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	PAS	IPR000014	-	-
Sma3	PAS-associated, C-terminal	IPR000700	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	AGC-kinase, C-terminal	IPR000961	-	-
Sma3	PAC motif	IPR001610	-	-
Sma3	Zinc finger, RanBP2-type	IPR001876	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Domain of unknown function DUF591	IPR007649	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	PAS fold-3	IPR013655	-	-
Sma3	PAS fold	IPR013767	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G52890.1	KIPK KCBP-interacting protein kinase chr3:19609150-19612032 FORWARD LENGTH=934	52%
RefSeq	Arabidopsis thaliana	NP_566973.2	KCBP-interacting protein kinase [Arabidopsis thaliana]	52%
RefSeq	Populus trichocarpa	XP_002313662.1	predicted protein [Populus trichocarpa]	55%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NV39

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 361 - 492

Fln protein: LNIL*FTYYTKYFTICILEIRKIQIHRIFLLHCDFSHWFQKKFMLDFSLVRRFYASEVLLAMEYLHMLGIVYRDLKPENVLVREDGHIMLTDFDLSLKCTVHPMLLQKSTGPGRESDADPDERPTLPAMPTPPSIIQSYVLPCTSGVQSHRHQQATTVSCLPVFHHFARRKSKPPKFHSLRYAESSATAASTLQLFAEPTDARSMSFVGTHEYLAPEIIAGEGHGNAVDWWTLGIFIFELLYGRTPFRGPDNDRTLANVVAQALHFPDDDEYDDEAAQGPGPSAAAKDLIRGLLVKDPAKRLASARGAAEIKQHPFFRGINWALIRCSIPPHIPSPFVPPRPRYPSTPEKRPTSGDFEDF*

Protein Length: 362

Fln nts: GGTTAAACATTTTATAATTTACATATTACACTAAATATTTTACAATTTGCATATTAGAAATTAGAAAAATTCAAATCCATCGAATTTTTTTATTGCATTGTGATTTTAGCCACTGGTTTCAGAAGAAATTCATGCTGGACTTTTCTTTGGTTCGCAGGTTCTATGCATCGGAAGTATTGCTGGCGATGGAGTATTTGCACATGCTGGGAATCGTATACAGAGATCTGAAGCCTGAGAATGTTCTAGTTCGTGAAGACGGCCATATCATGCTCACCGACTTCGACCTCTCCCTGAAATGTACCGTCCACCCGATGCTGCTTCAGAAGTCGACGGGGCCCGGCCGCGAGTCTGACGCTGACCCCGACGAGCGGCCAACGCTGCCAGCCATGCCGACGCCGCCGTCCATTATTCAGTCATACGTGCTGCCCTGCACCAGTGGCGTGCAGTCGCATCGCCACCAACAGGCGACAACCGTTTCTTGCCTTCCGGTGTTCCACCATTTCGCCAGAAGGAAATCGAAGCCGCCCAAATTCCATTCCCTCCGCTACGCAGAAAGCTCGGCCACGGCCGCGTCCACTCTGCAGCTCTTCGCCGAGCCGACCGATGCTCGCTCCATGTCGTTCGTGGGCACGCACGAGTACCTGGCGCCGGAGATCATAGCCGGTGAGGGCCACGGCAACGCTGTCGACTGGTGGACCCTCGGAATTTTCATCTTCGAGCTTCTCTACGGGCGGACTCCATTTCGCGGCCCCGACAACGATAGAACCCTCGCCAATGTCGTTGCCCAGGCATTGCATTTTCCAGACGACGACGAATACGATGACGAGGCGGCGCAGGGCCCCGGTCCCTCCGCGGCCGCCAAGGATCTCATCCGAGGGCTCCTCGTCAAAGACCCCGCGAAGCGCCTGGCCTCCGCTAGGGGCGCGGCGGAGATCAAGCAGCACCCGTTCTTCCGAGGAATAAACTGGGCGCTCATCCGTTGCTCCATTCCTCCGCACATTCCGAGCCCCTTCGTCCCGCCAAGGCCTCGGTACCCGAGCACTCCTGAGAAGCGGCCCACCAGTGGCGATTTCGAAGATTTTTAG___AAGATCCACGACTTTGTTCCTTTTGTGTGGGCATAGATTAAGTGTACATGATGATAATTTGTTTTCAGTGGGGGTGGAGGAGTGGGGCAAATCATATTAGCTGACGGACGGGCGGTGGGAAAGTCGGGAAAATGTGGGGTGGTTTCAGGCAGAGACATGATTTGTGTCTCTTCTGGTTGGATTATGCGACACACACAGGGAAACATGAATCTGAACTAAGTACTGCATTGCATTTGAAGTGTAAAGGCACTTCCTGGCTTTGTCAAATAGTTCTGACTGTCTGTTGCTCTGATTTTACTGTCAGTGATAATCAAATATAATCCTTCCTGTCTCTCTGTGGTAAACGAATTCCTAGAACATAGAACCACATTCCGATGAACTGCACTGCTCTTTTTTTGGGCCAACAGTGACCTGTAAAAATTGACGGGTGGTCAGTGAACATTCAATGTTATGAAAAATTAGTGTTTTCTCAGGATACTGCAGCATTAAATGTAATGTATTGGAATATATATTTTGAAATTTGAAATCTTCGTAGTTTAG

Fln Alignment:

Contig26855___RFYASEVLLAMEYLHMLGIVYRDLKPENVLVREDGHIMLTDFDLSLKCTVHPMLLQKSTGPGRESDADPDERPTLPAMPTPPSIIQSYVLPCTSGVQSHRHQQATTVSCLPVFHHFARRKSKPPKFHSLRYAESSATAASTLQLFAEPTDARSMSFVGTHEYLAPEIIAGEGHGNAVDWWTLGIFIFELLYGRTPFRGPDNDRTLANVVAQALHFPDDDEYDDEAAQGPGPSAAAKDLIRGLLVKDPAKRLASARGAAEIKQHPFFRGINWALIRCSXXXXXXXXXXXXXXXXXXXPEKRPTSGDFEDF
A9NV39_______________RFYASEVLLALEYLHMLGIVYRDLKPENVLVREDGHIMLTDFDLSLKCIVHPTLLQKSRGLESLFDIDSDDRATPPGMPTPSSIIQSYVLPCG---HPSRQNNPTTVSCLPVFHHFAKKKSKPPKFHSLRHAESSASAASNLQLLAEPTDARSMSFVGTHEYLAPEIIAGDGHGNAVDWWTLGIFIFELLYGRTPFRGPDNDKTLANVVAQALHFPDDDDEDDETVLGLGPSAAAKDLIRGLLVKDPSRRMASSRGASEIKQHAFFRGINWALIRCSIPPHIPSPFVPPRPPPPSPPDKRPTSGDFEDF

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
326	25		75		1.0
435		40		60	1.0
484	50			50	1.0
637		20	80		0.995493
638			80	20	0.995493
639	80	20			0.995493
640			80	20	0.995493
643	80	20			0.995493
645	20		80		0.995493
688	25			75	0.996473
689		25	75		0.996473
690	25	75			0.996473
692			75	25	0.996473
799	33		66		0.997452
800	33	66			0.997452
801		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain