SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene26840

Length: 3030 nt

UniGene Fasta

>sp_v3.0_unigene26840
ACCGTCATTTTCTAGTTGCAGAGCAACATATGGTTTTAGCTACAAGACGCTGTGAGCAGCGCATTCTGTTAGTTTGAAATAACGCCATTCCCAATAAGGAGATTGACTCGAATAAAATTGATCCAGCGGCCAGGCGCCATCATGACAGGGCAGGACGAGAGCAACTATAAAATGAAAGTAACCTCTGCGTCGATCGACCATACTCCCCTCAGCAAACCCTGGAATATATAGTTTTTAACTGCACAAGTCAGCATTTTATTTTTATTCGTGCGGGCAAAAAAGGAAATGCGGAGAGTATTAGTTCTATGATCCATGGAAATCCAAGGAGCTTTAATTATTCTAATCGAAATAATTATCTATAGGGTTAAGAAATGGCGCAGTCCCTGGTAGGGAAAATGCTGGATTGCGGTTTAATGATTTCGTGTTTACATGGATTCAGAGCTTCGATTCTCTGTGCGAAAAGCTTTAAAAACGCTAGTCCGCTAAAGAATGTAATTCGTCTACCAAAGAAGCAATGCCGGCGCTTTGCCGTCCCCGTTCATTTGCGGAGAAGATCTATTTTCGCAGTTAATTCTTCTTCTTCTTCTGGCTCTGAATTTGAGATAATCTCCACCAGAGAGTTTTCAGATGGAAGCATTATGTTTCACTTTGGCATCCCGGAACGAATCGCGGAGACGGAACAACTTTGTTCGAATCGGCAACCGTTGTCCGCATTAGCAGAAGTTGACATGCCAACAGATGCGAGCGCAATTAACGGCAATTTGGTCATGGATTCAGGATCGGGGGTTTTCAAGGATCCTTGCGAGTCAAAGGCGAGTAAAACTGAGGATACAAATTTAGTTTCTGTTGATAAAAATAAAATGTTGTCGGAGAATGAGGAGGGTACTGGCGGCTTTAGTACTACAAAGAAAATGAAAATGTCGGAGGAAGACATAGGCAGGGTCACAACAATTGTAGTAAAAAATTCCGGTGATGAAACGGGCAAGCGTAAGGAATCTTGTGAACTTAATGAGAAGTTAAGGGAGGATAGGGTTAGTGTCGCTGGTACAAGGTCAGAGGAAAAGAACGGGGTTTCTGGTGAAATTGGAAGTGGAGCTGTTAGCAACACTGACACAAATTTACGGGGTGAAATCTCTGAATTTCTATCGACTGATGGGATAAACTCAGATGAGAGTGGTGGATCTATCAGCAATGCAAAAGGGACCCTGACAGTTGACACGATGCTTGAACCCGCGGAAAAATTTGGAGAAAAATTGGTTGGACCTGATGACAATACACAGATAAAGTTGGATGACGCAGTGCTCGAGAGCATTGAGAAATTCGGAGAGCAGTCTGGTGTTGAGAACGGTCCAAAGGAAGATTCTGAACAGAAAGCAGAAAATGGGTGTATATCTGAAATAACTTCTCAATTTCAACAAAAGATTGAAGAGAAATGTGAAACTGTAGCTGCTGAAGATTTCGAAACAGTGGAAGAATTAAAGGATGCGGTGGAGCGGAAGGAGAAGGATGGAGAAGGGGATAAACTTGAAACAGGGAGAACACTTAGTCTTCTATCTGGTGTTTTTATGCTTCCACATCCTACTAAGGCATCTACTGGTGGTGAGGATGCTTACTTTGTAACACATAATAACTGGGTTGGGGTTGCTGATGGGGTTGGTCAGTGGGCACTCGAAGGAATCAATTCAGGACTGTATGCACAGGAGCTTATGGAAAATTGTAGGAAGCTTGTATCTGAAGAAAGTACAAGTGCTGACCCAAAGCAAGTACTTGTCATGAGTGCTATGGAAGCAAAGTCTGCAGGCTCATCAACAGTGTTGGTAGCCAGTCTGGTTGGTGAGACTCTTCACGTTGTAAACCTTGGAGATTCTGGATTTATTGTCATTCGAGAAGGATCTGTTATTGCAAAGTCATCTCCAATGACACATGGATTTAATTTTCCTTACCAGATTGAGAGAGGAGATGATCCATCATTGCTATTGGAGAGCTATGACATTGCCCTGGATGATGGAGATGTAATTGTTACAGCTACAGATGGCCTTTTTGATAACTTATATGACCACGAGATAGCTTCTATTATACACAATTCTTTGCAATCAGGTTTGGGACCTAAGGAAATGGCGACTTTACTGGCAGAAAAGGCACAGGAGAGAGGCAAGTCGACATCAGGGACCAGCCCCTTTTCTGAGGCAGCTCGAGCAGCTGGCTATAATACATACATTGGTGGGAAGCTGGATGATGTCACGGTCATTGTATCATTAGTGAAAGGCAATGCCAAAGAGCAGGAGGAGATTTAAACTTTAGAGTTTATACAGGTTGCTGACAACCGATTCAGAATATCGGGTTATCTTCCGAATCTCTCATTTTTGGGGCATGTGCTTGTATGTACATGAAAAGTATATTTGTTTAAAAGATAACACGAGACTGTAACATAGAAATGTCAATGGTGTAATCTTCTTGGTAAACGAGAAAGATATTGTACCGTGTGAAATGTATAGTTGTTGTAGGGACACTGATCATTTGAATTCAATTAATACACAAATAGCAGGAATTGGTGGACATTCTTGATAAAAGGTTGATGTAAATTTCCTTTCTTCACCCATCATTGGGTATTTTATACTGATGGGTTTGAACTCTGTTCCATAAATCTGCCCATCCTTTGTATACTTTTAAGTAGGAGCATTCATCTATGGTGACCGTTCGTCAATGCAGACCAAAAGCGGGGATTCAACATGGGAACACGTTGTCTCGCTTACTATGCTTGAAGCTTTTCTGTGATAAATAAATGCAGATAAATCATTGAACTTACAGAAAATTCCAGAGTTGGTCACATTATTGTATTAATGGTCGATAAACTTTGGAAACGCTCAAACTCGTCTATGATTTATGAAGTCAAGCTCAATATTCGAGGAGATTGTCTGTATTGGCTGACATCTGCACATATTCCAGGTCATTAACGAATCCCATTATATTTTCCTTACATTAGATCCATTGATTTCAATATGGTCGTAATCACATTTCATGTTTTTCTCA

Ace file of the UniGene sp_v3.0_unigene26840

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Protein phosphatase 2C n=1 Tax=Zea mays RepID=B6U2F2_MAIZE	-	-	0.0	36%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	93%
Sma3	Protein phosphatase 2c, putative	-	-	1.151e-08	-

Source	ECs	Term	Type	e value	Identity
Sma3	Phosphoprotein phosphatase.	EC:3.1.3.16	-	1.528e-11	-

Source	Gene names
Sma3	At4g16580; At5g66720; BIPP2C1; CHLREDRAFT_142396; FCAALL.400; GSVIVT00009551001; GSVIVT00015482001; GSVIVT00024978001; LOC_Os03g59470; LOC_Os10g22460; MSN2.11; OJ1003C07.6; OSJNBa0028F23.19; Os03g0809300; Os10g0370000; OsI_10348; OsI_14009; OsJ_030057; Os

Source	GOs	Term	Type	Identity
Sma3	chloroplast stroma	GO:0009570	Cellular Component	-
Sma3	magnesium ion binding	GO:0000287	Molecular Function	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	phosphoprotein phosphatase activity	GO:0004721	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	manganese ion binding	GO:0030145	Molecular Function	-
Sma3	DNA integration	GO:0015074	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Protein phosphatase 2C-like	IPR001932	-	-
Sma3	Phosphotransferase system, HPr serine phosphorylation site	IPR002114	-	-
Sma3		IPR010822	-	-
Sma3		IPR013084	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3		IPR014045	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002326888.1	predicted protein, partial [Populus trichocarpa]	0.0	46%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ACC8

Fln msg: your sequence is longer than subject: 641 - 238

Fln protein: MAQSLVGKMLDCGLMISCLHGFRASILCAKSFKNASPLKNVIRLPKKQCRRFAVPVHLRRRSIFAVNSSSSSGSEFEIISTREFSDGSIMFHFGIPERIAETEQLCSNRQPLSALAEVDMPTDASAINGNLVMDSGSGVFKDPCESKASKTEDTNLVSVDKNKMLSENEEGTGGFSTTKKMKMSEEDIGRVTTIVVKNSGDETGKRKESCELNEKLREDRVSVAGTRSEEKNGVSGEIGSGAVSNTDTNLRGEISEFLSTDGINSDESGGSISNAKGTLTVDTMLEPAEKFGEKLVGPDDNTQIKLDDAVLESIEKFGEQSGVENGPKEDSEQKAENGCISEITSQFQQKIEEKCETVAAEDFETVEELKDAVERKEKDGEGDKLETGRTLSLLSGVFMLPHPTKASTGGEDAYFVTHNNWVGVADGVGQWALEGINSGLYAQELMENCRKLVSEESTSADPKQVLVMSAMEAKSAGSSTVLVASLVGETLHVVNLGDSGFIVIREGSVIAKSSPMTHGFNFPYQIERGDDPSLLLESYDIALDDGDVIVTATDGLFDNLYDHEIASIIHNSLQSGLGPKEMATLLAEKAQERGKSTSGTSPFSEAARAAGYNTYIGGKLDDVTVIVSLVKGNAKEQEEI*

Protein Length: 642

Fln nts: ACCGTCATTTTCTAGTTGCAGAGCAACATATGGTTTTAGCTACAAGACGCTGTGAGCAGCGCATTCTGTTAGTTTGAAATAACGCCATTCCCAATAAGGAGATTGACTCGAATAAAATTGATCCAGCGGCCAGGCGCCATCATGACAGGGCAGGACGAGAGCAACTATAAAATGAAAGTAACCTCTGCGTCGATCGACCATACTCCCCTCAGCAAACCCTGGAATATATAGTTTTTAACTGCACAAGTCAGCATTTTATTTTTATTCGTGCGGGCAAAAAAGGAAATGCGGAGAGTATTAGTTCTATGATCCATGGAAATCCAAGGAGCTTTAATTATTCTAATCGAAATAATTATCTATAGGGTTAAGAA_-_ATGGCGCAGTCCCTGGTAGGGAAAATGCTGGATTGCGGTTTAATGATTTCGTGTTTACATGGATTCAGAGCTTCGATTCTCTGTGCGAAAAGCTTTAAAAACGCTAGTCCGCTAAAGAATGTAATTCGTCTACCAAAGAAGCAATGCCGGCGCTTTGCCGTCCCCGTTCATTTGCGGAGAAGATCTATTTTCGCAGTTAATTCTTCTTCTTCTTCTGGCTCTGAATTTGAGATAATCTCCACCAGAGAGTTTTCAGATGGAAGCATTATGTTTCACTTTGGCATCCCGGAACGAATCGCGGAGACGGAACAACTTTGTTCGAATCGGCAACCGTTGTCCGCATTAGCAGAAGTTGACATGCCAACAGATGCGAGCGCAATTAACGGCAATTTGGTCATGGATTCAGGATCGGGGGTTTTCAAGGATCCTTGCGAGTCAAAGGCGAGTAAAACTGAGGATACAAATTTAGTTTCTGTTGATAAAAATAAAATGTTGTCGGAGAATGAGGAGGGTACTGGCGGCTTTAGTACTACAAAGAAAATGAAAATGTCGGAGGAAGACATAGGCAGGGTCACAACAATTGTAGTAAAAAATTCCGGTGATGAAACGGGCAAGCGTAAGGAATCTTGTGAACTTAATGAGAAGTTAAGGGAGGATAGGGTTAGTGTCGCTGGTACAAGGTCAGAGGAAAAGAACGGGGTTTCTGGTGAAATTGGAAGTGGAGCTGTTAGCAACACTGACACAAATTTACGGGGTGAAATCTCTGAATTTCTATCGACTGATGGGATAAACTCAGATGAGAGTGGTGGATCTATCAGCAATGCAAAAGGGACCCTGACAGTTGACACGATGCTTGAACCCGCGGAAAAATTTGGAGAAAAATTGGTTGGACCTGATGACAATACACAGATAAAGTTGGATGACGCAGTGCTCGAGAGCATTGAGAAATTCGGAGAGCAGTCTGGTGTTGAGAACGGTCCAAAGGAAGATTCTGAACAGAAAGCAGAAAATGGGTGTATATCTGAAATAACTTCTCAATTTCAACAAAAGATTGAAGAGAAATGTGAAACTGTAGCTGCTGAAGATTTCGAAACAGTGGAAGAATTAAAGGATGCGGTGGAGCGGAAGGAGAAGGATGGAGAAGGGGATAAACTTGAAACAGGGAGAACACTTAGTCTTCTATCTGGTGTTTTTATGCTTCCACATCCTACTAAGGCATCTACTGGTGGTGAGGATGCTTACTTTGTAACACATAATAACTGGGTTGGGGTTGCTGATGGGGTTGGTCAGTGGGCACTCGAAGGAATCAATTCAGGACTGTATGCACAGGAGCTTATGGAAAATTGTAGGAAGCTTGTATCTGAAGAAAGTACAAGTGCTGACCCAAAGCAAGTACTTGTCATGAGTGCTATGGAAGCAAAGTCTGCAGGCTCATCAACAGTGTTGGTAGCCAGTCTGGTTGGTGAGACTCTTCACGTTGTAAACCTTGGAGATTCTGGATTTATTGTCATTCGAGAAGGATCTGTTATTGCAAAGTCATCTCCAATGACACATGGATTTAATTTTCCTTACCAGATTGAGAGAGGAGATGATCCATCATTGCTATTGGAGAGCTATGACATTGCCCTGGATGATGGAGATGTAATTGTTACAGCTACAGATGGCCTTTTTGATAACTTATATGACCACGAGATAGCTTCTATTATACACAATTCTTTGCAATCAGGTTTGGGACCTAAGGAAATGGCGACTTTACTGGCAGAAAAGGCACAGGAGAGAGGCAAGTCGACATCAGGGACCAGCCCCTTTTCTGAGGCAGCTCGAGCAGCTGGCTATAATACATACATTGGTGGGAAGCTGGATGATGTCACGGTCATTGTATCATTAGTGAAAGGCAATGCCAAAGAGCAGGAGGAGATTTAA___ACTTTAGAGTTTATACAGGTTGCTGACAACCGATTCAGAATATCGGGTTATCTTCCGAATCTCTCATTTTTGGGGCATGTGCTTGTATGTACATGAAAAGTATATTTGTTTAAAAGATAACACGAGACTGTAACATAGAAATGTCAATGGTGTAATCTTCTTGGTAAACGAGAAAGATATTGTACCGTGTGAAATGTATAGTTGTTGTAGGGACACTGATCATTTGAATTCAATTAATACACAAATAGCAGGAATTGGTGGACATTCTTGATAAAAGGTTGATGTAAATTTCCTTTCTTCACCCATCATTGGGTATTTTATACTGATGGGTTTGAACTCTGTTCCATAAATCTGCCCATCCTTTGTATACTTTTAAGTAGGAGCATTCATCTATGGTGACCGTTCGTCAATGCAGACCAAAAGCGGGGATTCAACATGGGAACACGTTGTCTCGCTTACTATGCTTGAAGCTTTTCTGTGATAAATAAATGCAGATAAATCATTGAACTTACAGAAAATTCCAGAGTTGGTCACATTATTGTATTAATGGTCGATAAACTTTGGAAACGCTCAAACTCGTCTATGATTTATGAAGTCAAGCTCAATATTCGAGGAGATTGTCTGTATTGGCTGACATCTGCACATATTCCAGGTCATTAACGAATCCCATTATATTTTCCTTACATTAGATCCATTGATTTCAATATGGTCGTAATCACATTTCATGTTTTTCTCA

Fln Alignment:

Contig26840___MLPHPTKASTGGEDAYFVTHNNWVGVADGVGQWALEGINSGLYAQELMENCRKLVSEESTSADPKQVLVMSAMEAKSAGSSTVLVASLVGETLHVVNLGDSGFIVIREGSVIAKSSPMTHGFNFPYQIERGDDPSLLLESYDIALDDGDVIVTATDGLFDNLYDHEIASIIHNSLQSGLGPKEMATLLAEKAQERGKSTSGTSPFSEAARAAGYNTYIGGKLDDVTVIVSLVKGNAKE
D5ACC8_______________MLPHPTKASTGGEDAYFVTRNNWVGVADGVGQWALEGINSGLYAQELMENCRKLVSEESPSADPRQVLVMSAMEAKSAGSSTVLVASLIGQTLHVVNLGDSGFIVIRGGSVIVKSSPMTHGFNFPYQIERGDDPSLLLESYDITLNDGDVIVTATDGLFDNLYDHEIASIIQNSLQSGLGPKEMATLLAEKAHERGKSTSGSSPFSDAARAVGYNTYIGGKLDDVTVIVSLVKVNTKE

SNPs (tot: 37)

Position	A %	C %	G %	T %	Probability
203		33	66		0.997452
983		60		40	1.0
997		40	60		1.0
1078		33	66		1.0
1257	12		87		0.992554
1487	40		60		1.0
1634		50		50	1.0
1886	12			87	0.992554
1888	12		87		0.992554
1889	87			12	0.992554
1890			87	12	0.992554
1917		85		14	0.993533
2004		40	60		1.0
2380			20	80	0.995493
2383	20			80	0.995493
2384	80	20			0.995493
2385		20		80	0.995493
2386			80	20	0.995493
2388	80		20		0.995493
2389		80	20		0.995493
2390	80	20			0.995493
2393	80			20	0.995493
2394	80	20			0.995493
2396	80	20			0.995493
2397			80	20	0.995493
2398		20		80	0.995493
2455	14			85	0.993533
2456		14		85	0.993533
2457	14	85			0.993533
2469		16	83		0.994512
2471	83			16	0.994512
2472	83			16	0.994512
2779	10			90	0.90298
2780	90	10			0.90298
2782	90			10	0.90298
2816	16			83	0.994512
2817		16		83	0.994512

SSRs (tot: 1)

Start position	End position	Sequence	Length
572	587	TTC TTC TTC TTC TTC T	16

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain