SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene26801

Length: 2730 nt

UniGene Fasta

>sp_v3.0_unigene26801
TTCTCCAGCACATTCTGCGATAATTTTCTATTTTCCCTTTTGCCCATTAACGAGGCTGAGGAAGTGGGAGCTCTTCTGAGATTTTGATAGTACCGAAGCTGAAGTCATTCGCTGATTTGGTGATAAATCTCTGTTCAGCCACTAATAAGTTTGTGGGTATTGAACCTCCAGATCTGATGGTGCAAGCACGGAGGGCGTATAGCACCCGTTGATTAGCGTTTTCTGCAGGAAATTATGTCTATGAAGAAGGGATGGAAGAGATATGGAATAGTGGTGTTTTTGGTGCTTCTATCCATGCTCGTTCCATTGGTATTCTTGCTCGGACTCAATGCTGGATTTCAGAGCAGCTATATCAATGATGAAGTCCCTCCAACGCTGAACCAGACAGATTTTACCAGGATTGTCAGTCTGTCTAAACACGATGATGCTTCACAACAAACAGAGAGAAATCTTTCTAGGCATCTGGATGATCTAAACAAATTGGGGTCTGAACTATCAAAGGTTTCCAAAGATGAAGTTGTAACAAAGGCCTCAAATTTTTCTGCAACAAATGTTATTATTTCCCAGACAAAGCCATATATAGTTGCCAAAGATACTGACTTCAACACTGGTTACAACTTCTCTGGCACGACTCATGGAAATCTGGATAAATTATTAACCAGGCATCCAATCTCAGGAGGATTGTCAGAGAAACCTGGTGTTTCATTGCCAGAAAGCAGAGCAGAAAAGAAGAGCGGAAAACTAGCTCACAGGGATGTTAAAAAGAAATTCAGTGCTGATGGCCTCTCTGATGACCCAGACAAAGCTTGTGAAGTGGCTCTGGGCAGTTACTGCATCTGGAGAAATGAGCATAGGGTAGAAGTGGCTGATGCAACCGTGAGACTGTTGAAAAATCAGCTCTTTCTTGCAAGAGCTTATTATCCAAGCATTATAAAACACCGCAATCGTGAGAAAATCCAACAGGAGCTAAGGAAGCATATCCAGGATATTGAACATATGCTAAGTGAGGCAACTGCAGATGCTGATTTGCCAGAGAGGGCATGGAAGAAGACAAAGATTATGGAAGGAGTTCTAGCAAAAGCAAAAACTTACCCTGTTGATTGCAATAATGTGGTAAAAAAGTTGGGACAAATCTTAGACCTTACTGAGGATGAAGCTCATTTTCACAGAAAACAAAGTGTCTTCCTCTACCAACTTGCTGTCCAAACAATGCCAAAAAGTCTTCATTGCCTTTCAATGAGATTGACTGTGGAATATTTTCAAACTTATCAAAGCAACATCGAATTACCATTGACCAAGAACTTGGAAGATTCAAGTCTTTATCATTATGTCATTTACTCTACTAATATCCTCGCAGTGTCTGTGGTTATTAATTCTACTGTTGTTCATGCCAAGGAGCCGGAGAAGCATGTATTTCATTTGATTACAGATAGACAAAACTATGTTGCAATAAAATTCTGGTTTCTGGAGAACACCTATAGCAATGCAACTGTCCATGTTCAGAGTCTGGATGATTTAAATCTTCGTCATTATAACAATTCTGTGATGGGTTCTTTATCATCAGAGGAGTTTCGTGTTGGTATAGAAAGCCCCACTAAATTTTCTAATGATCCCTCTAACTCAACTAAGGAGCTTAAATACTTGTCTACCTTCAATCATCCTCACTTTTGGCTTCCTGAAATTTTTCCAAGACTGAACAAAGTGCTATTTCTAGATGATGATGTGGTCGTGCAAAGGGACCTGACACCTCTTTGGAGTATTAATTTGCATGGGAAGGTAAATGGTGCCATGGAGATTTGTGAAGTAAGGTTTCATCACTTGAGGAAGTACCTTAACTCTTCAAAGCTTTTCCCAAATGGTTTTGATGGAAATGCGTGTGCATGGATGTCTGGATTGAATATTATTGATCTGCAACAATGGAGGAAGCAAGACCTGACCAAAGTTTACAGGAGATGGCTAAAGATGCAAAATAGGTATAATATTCCGTGGAGATTTGGGACATTGCCTGCAAGTCTGATTACATTCTACAATATGACCCATCGCCTGGAAGACTCTTGGCTTTCAGTTGGTTTAGGGCATGACTTTGGAATTGATCAGCTTGATATAGAAAAATCTCCTGTTTTGCATTATAATGGCAACTTGAAGCCGTGGTTAGAGATAGGTATTAATAAATACAAGCCATATTGGGCTAAGTATTTAAAACAAGAGGGTCAATTCATGCTTGAATGCAATGTCAATAGATGATGCTGTGATATATTTATGTGGATCATATCTTGAAGTGGCAGATTTGTGAAGGCATAGCAGTGTGTGATGCCATGGAATGGATCGACGTGGTTTTGCAAAAGCCTTATTGGAAGCAAGCATGGATGTGTATTGGCTCATGGGCTAAACCTTTGAAACAAAATTATTCTTTTATTCAAGATTGTAATATCATTTAGTAGGGGCTTCCAATTCTGGAAGCTATTCCAATTCATGAATCGTGTCCTTTCAGGCTTCTACGGTTTTGAATCTATGATTAGAGTGCTGTTAATTTTCTGATATTGGCCTAGTCATAGGTAACTTATAGAATATAGATGATAGAGGAGAATCATAATTTTAAGGACTCAAGACATACTCTGATCACTTATTTGATTCTTTTTTACTCAGAACAGTCTCAAAGAATACAGGGTAACTAGCTTTCTGTATTTTGAGTTCATTCTTCCTAGCAGGGCCTGCATTCCAATCAACTAT

Ace file of the UniGene sp_v3.0_unigene26801

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Glycosyltransferase, CAZy family GT8 n=1 Tax=Populus trichocarpa RepID=B9IGZ9_POPTR	-	-	0.0	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	85%
Sma3	Glycosyltransferase QUASIMODO1, putative	-	-	3.009e-17	-

Source	Gene names
Sma3	AT4g38270; At2g38650; At3g02350; At3g61130; At4g38270; At5g47780; B1142B04.29; F22I13.40; GSVIVT00000005001; GSVIVT00011843001; GSVIVT00012272001; GSVIVT00026306001; GSVIVT00026307001; GSVIVT00033610001; GSVIVT00036268001; LGT1; LOC_Os03g21250; LOC_Os10g2

Source	GOs	Term	Type	Identity
Sma3	Golgi apparatus	GO:0005794	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	transferase activity, transferring glycosyl groups	GO:0016757	Molecular Function	-
Sma3	polygalacturonate 4-alpha-galacturonosyltransferase activity	GO:0047262	Molecular Function	-
Sma3	homogalacturonan biosynthetic process	GO:0010289	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Glycosyl transferase, family 8	IPR002495	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002323701.1	glycosyltransferase, CAZy family GT8 [Populus trichocarpa]	0.0	51%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NQQ9

Fln msg:

Fln protein: MEEIWNSGVFGASIHARSIGILARTQCWISEQLYQ*

Protein Length: 37

Fln nts: TTCTCCAGCACATTCTGCGATAATTTTCTATTTTCCCTTTTGCCCATTAACGAGGCTGAGGAAGTGGGAGCTCTTCTGAGATTTTGATAGTACCGAAGCTGAAGTCATTCGCTGATTTGGTGATAAATCTCTGTTCAGCCACTAATAAGTTTGTGGGTATTGAACCTCCAGATCTGATGGTGCAAGCACGGAGGGCGTATAGCACCCGTTGATTAGCGTTTTCTGCAGGAAATTATGTCTATGAAGAAGGG_-_ATGGAAGAGATATGGAATAGTGGTGTTTTTGGTGCTTCTATCCATGCTCGTTCCATTGGTATTCTTGCTCGGACTCAATGCTGGATTTCAGAGCAGCTATATCAATGA___TGAAGTCCCTCCAACGCTGAACCAGACAGATTTTACCAGGATTGTCAGTCTGTCTAAACACGATGATGCTTCACAACAAACAGAGAGAAATCTTTCTAGGCATCTGGATGATCTAAACAAATTGGGGTCTGAACTATCAAAGGTTTCCAAAGATGAAGTTGTAACAAAGGCCTCAAATTTTTCTGCAACAAATGTTATTATTTCCCAGACAAAGCCATATATAGTTGCCAAAGATACTGACTTCAACACTGGTTACAACTTCTCTGGCACGACTCATGGAAATCTGGATAAATTATTAACCAGGCATCCAATCTCAGGAGGATTGTCAGAGAAACCTGGTGTTTCATTGCCAGAAAGCAGAGCAGAAAAGAAGAGCGGAAAACTAGCTCACAGGGATGTTAAAAAGAAATTCAGTGCTGATGGCCTCTCTGATGACCCAGACAAAGCTTGTGAAGTGGCTCTGGGCAGTTACTGCATCTGGAGAAATGAGCATAGGGTAGAAGTGGCTGATGCAACCGTGAGACTGTTGAAAAATCAGCTCTTTCTTGCAAGAGCTTATTATCCAAGCATTATAAAACACCGCAATCGTGAGAAAATCCAACAGGAGCTAAGGAAGCATATCCAGGATATTGAACATATGCTAAGTGAGGCAACTGCAGATGCTGATTTGCCAGAGAGGGCATGGAAGAAGACAAAGATTATGGAAGGAGTTCTAGCAAAAGCAAAAACTTACCCTGTTGATTGCAATAATGTGGTAAAAAAGTTGGGACAAATCTTAGACCTTACTGAGGATGAAGCTCATTTTCACAGAAAACAAAGTGTCTTCCTCTACCAACTTGCTGTCCAAACAATGCCAAAAAGTCTTCATTGCCTTTCAATGAGATTGACTGTGGAATATTTTCAAACTTATCAAAGCAACATCGAATTACCATTGACCAAGAACTTGGAAGATTCAAGTCTTTATCATTATGTCATTTACTCTACTAATATCCTCGCAGTGTCTGTGGTTATTAATTCTACTGTTGTTCATGCCAAGGAGCCGGAGAAGCATGTATTTCATTTGATTACAGATAGACAAAACTATGTTGCAATAAAATTCTGGTTTCTGGAGAACACCTATAGCAATGCAACTGTCCATGTTCAGAGTCTGGATGATTTAAATCTTCGTCATTATAACAATTCTGTGATGGGTTCTTTATCATCAGAGGAGTTTCGTGTTGGTATAGAAAGCCCCACTAAATTTTCTAATGATCCCTCTAACTCAACTAAGGAGCTTAAATACTTGTCTACCTTCAATCATCCTCACTTTTGGCTTCCTGAAATTTTTCCAAGACTGAACAAAGTGCTATTTCTAGATGATGATGTGGTCGTGCAAAGGGACCTGACACCTCTTTGGAGTATTAATTTGCATGGGAAGGTAAATGGTGCCATGGAGATTTGTGAAGTAAGGTTTCATCACTTGAGGAAGTACCTTAACTCTTCAAAGCTTTTCCCAAATGGTTTTGATGGAAATGCGTGTGCATGGATGTCTGGATTGAATATTATTGATCTGCAACAATGGAGGAAGCAAGACCTGACCAAAGTTTACAGGAGATGGCTAAAGATGCAAAATAGGTATAATATTCCGTGGAGATTTGGGACATTGCCTGCAAGTCTGATTACATTCTACAATATGACCCATCGCCTGGAAGACTCTTGGCTTTCAGTTGGTTTAGGGCATGACTTTGGAATTGATCAGCTTGATATAGAAAAATCTCCTGTTTTGCATTATAATGGCAACTTGAAGCCGTGGTTAGAGATAGGTATTAATAAATACAAGCCATATTGGGCTAAGTATTTAAAACAAGAGGGTCAATTCATGCTTGAATGCAATGTCAATAGATGATGCTGTGATATATTTATGTGGATCATATCTTGAAGTGGCAGATTTGTGAAGGCATAGCAGTGTGTGATGCCATGGAATGGATCGACGTGGTTTTGCAAAAGCCTTATTGGAAGCAAGCATGGATGTGTATTGGCTCATGGGCTAAACCTTTGAAACAAAATTATTCTTTTATTCAAGATTGTAATATCATTTAGTAGGGGCTTCCAATTCTGGAAGCTATTCCAATTCATGAATCGTGTCCTTTCAGGCTTCTACGGTTTTGAATCTATGATTAGAGTGCTGTTAATTTTCTGATATTGGCCTAGTCATAGGTAACTTATAGAATATAGATGATAGAGGAGAATCATAATTTTAAGGACTCAAGACATACTCTGATCACTTATTTGATTCTTTTTTACTCAGAACAGTCTCAAAGAATACAGGGTAACTAGCTTTCTGTATTTTGAGTTCATTCTTCCTAGCAGGGCCTGCATTCCAATCAACTAT

Fln Alignment:

Contig26801___MEEIWN-SGVFGASIHARSIGILARTQCWISEQLY
A9NQQ9_______________MEEIWSCSGVFGAAIHARSIGILARTLWWISEQLY

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
352	25			25	0.995533
946	41		58		1.0
962	45	54			1.0
1850	20		80		0.995493
2384		85		14	0.993533
2446	83	16			0.994512
2448			83	16	0.994512
2449		16	83		0.994512
2451		83		16	0.994512
2452			16	83	0.994512
2453	16			83	0.994512
2456	83			16	0.994512
2457	83			16	0.994512
2458			16	83	0.994512
2459			16	83	0.994512
2463		16	83		0.994512
2465	83	16			0.994512
2466			83	16	0.994512
2468	16			83	0.994512
2476	33			66	1.0
2478		80		20	0.995493
2480		20		80	0.995493
2481	20		80		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain