SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene26691

Length: 575 nt

UniGene Fasta

>sp_v3.0_unigene26691
AATGCAATCCGACTCTTTAGTGGAACTCGGACAATGCGTTATTGAATTCTGAGATTATTGAACGAGGTCAGTTATTTGAGAGCGGCCAGAGGTGGAACTAAGTAAAAGTGGAGGCATGGAGAAATGCAGGAATTGTGAGAAAGCACAACACTTCGTGCTGGTTCACGGAGCAGGGCATGGTAGTTGGTGCTGGTATAAAGTCCAGCATCTTCTTGAGAAGGCAGGTCACCGGGTTACTTCCATAGATCTGGCAGGAGGTGGTAGCAGTACAATTGATCCAAACACCATCCTCTCATTTCATGATTATACAATGCCTCTCATTGAGTTTCTGTCTCAGTTATCAATTTCTGACAAGGTTGTGCTCGTGGGCCATAGCGCTGGAGGGCTGAGCTTGACATACGCAACACATCTCTTCTCTGACAAGATCAGAGTTGCAATCTATATAGCAGCCACCATGTTGCCAGCAGGCTTCTGCTCTGAACAGGACGTTCAAATGGGCGTTCCTCAATTGTTTGAAGAATATGAATTCCAATATGGGCTGGGTTCACACAATCCTCCCACCACTGCAATGGTTC

Ace file of the UniGene sp_v3.0_unigene26691

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[R] COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)	-	-	1.0e-06	28%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	60%
Sma3	Putative acetone-cyanohydrin lyase	-	-	8.719e-19	-

Source	ECs	Term	Type	e value	Identity
Sma3	Polyneuridine-aldehyde esterase.	EC:3.1.1.78	-	3.3e-07	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Indole alkaloid biosynthesis	00901		3.3e-07	%
Sma3	Biosynthesis of secondary metabolites	01110		3.3e-07	%

Source	Gene names
Sma3	At2g23560; At2g23590; At2g23600; At2g23610; At2g23620; At3g10870; At5g58310; GSVIVT00029477001; GSVIVT00030027001; LOC_Os11g02580; LOC_Os12g02500; Os11g0118000; Os12g0117100; Os12g0117200; OsI_34885; OsI_34886; OsI_37243; OsI_37244; OsJ_32736; OsJ_32737;

Source	GOs	Term	Type	Identity
Sma3	hydrolase activity	GO:0016787	Molecular Function	-
Sma3	hydrolase activity, acting on ester bonds	GO:0016788	Molecular Function	-
Sma3	lyase activity	GO:0016829	Molecular Function	-
Sma3	systemic acquired resistance	GO:0009627	Biological Process	-
Sma3	salicylic acid metabolic process	GO:0009696	Biological Process	-
Sma3	defense response to fungus, incompatible interaction	GO:0009817	Biological Process	-
Sma3	indoleacetic acid conjugate metabolic process	GO:0033473	Biological Process	-
Sma3	shoot development	GO:0048367	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Alpha/beta hydrolase fold-1	IPR000073	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G10870.1	MES17, ATMES17 methyl esterase 17 chr3:3401228-3402612 REVERSE LENGTH=276	3.00004e-41	47%
RefSeq	Arabidopsis thaliana	NP_187698.1	methyl esterase 17 [Arabidopsis thaliana]	3.00004e-41	47%
RefSeq	Populus trichocarpa	XP_002329236.1	predicted protein [Populus trichocarpa]	0.0	51%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NKW1

Fln msg: Distance to subject end: 108 aas, your sequence is shorter than subject: 153 - 263

Fln protein: MEKCRNCEKAQHFVLVHGAGHGSWCWYKVQHLLEKAGHRVTSIDLAGGGSSTIDPNTILSFHDYTMPLIEFLSQLSISDKVVLVGHSAGGLSLTYATHLFSDKIRVAIYIAATMLPAGFCSEQDVQMGVPQLFEEYEFQYGLGSHNPPTTAMV

Protein Length: 154

Fln nts: AATGCAATCCGACTCTTTAGTGGAACTCGGACAATGCGTTATTGAATTCTGAGATTATTGAACGAGGTCAGTTATTTGAGAGCGGCCAGAGGTGGAACTAAGTAAAAGTGGAGGC_-_ATGGAGAAATGCAGGAATTGTGAGAAAGCACAACACTTCGTGCTGGTTCACGGAGCAGGGCATGGTAGTTGGTGCTGGTATAAAGTCCAGCATCTTCTTGAGAAGGCAGGTCACCGGGTTACTTCCATAGATCTGGCAGGAGGTGGTAGCAGTACAATTGATCCAAACACCATCCTCTCATTTCATGATTATACAATGCCTCTCATTGAGTTTCTGTCTCAGTTATCAATTTCTGACAAGGTTGTGCTCGTGGGCCATAGCGCTGGAGGGCTGAGCTTGACATACGCAACACATCTCTTCTCTGACAAGATCAGAGTTGCAATCTATATAGCAGCCACCATGTTGCCAGCAGGCTTCTGCTCTGAACAGGACGTTCAAATGGGCGTTCCTCAATTGTTTGAAGAATATGAATTCCAATATGGGCTGGGTTCACACAATCCTCCCACCACTGCAATGGTTC

Fln Alignment:

Contig26691___HFVLVHGAGHGSWCWYKVQHLLEKAGHRVTSIDLAGGGSSTIDPNTILSFHDYTMPLIEFLSQLSISDKVVLVGHSAGGLSLTYATHLFSDKIRVAIYIAATMLPAGFCSEQDVQMGVPQLFEEYEFQYGLGSHNPPTTAMV
A9NKW1_______________HFVLIHGAGHGAWCWYKLIHLLRNSGHKVTAMDLTGSGLNSVDPDSVTSFEDYDMPLMSILSEIPYSQKVVLVGHSAGGLSLSHAIHVFGHKIAVAVYIAATMLSHGLCTDQDIQQGVPDLLKVSEFYHGLGSEQPPTSAMI

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
248		83		16	0.994512
298		50		50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain