SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene26658

Length: 1341 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene26658 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Catalytic, putative n=1 Tax=Ricinus communis RepID=B9SN26_RICCO	-	-	79%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	83%
Sma3	Catalytic, putative	-	-	-

Source	Gene names
Sma3	RCOM_0311410;

Source	InterPros	Term	Type	e value	Identity
Sma3	Beta-lactamase-like	IPR001279	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G13800.1	Metallo-hydrolase/oxidoreductase superfamily protein chr3:4538879-4541366 FORWARD LENGTH=361	69%
RefSeq	Arabidopsis thaliana	NP_187996.2	metallo-beta-lactamase family protein [Arabidopsis thaliana]	69%
RefSeq	Populus trichocarpa	XP_002327550.1	predicted protein [Populus trichocarpa]	77%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9P1A5

Fln msg: your sequence is longer than subject: 403 - 108

Fln protein: MCCSHSSLSFASLRTLTATSSSASLLGWRQFNHVTQISFTNPPSSSLVNCCQGRQKPHFFSAGRHYYYYAQGIHKPGLINRRFRHPTLFMQLHSQSNSARHVDQVPLTEHSTTSNEKGSELIFLGTGTSEGIPRVSCLTDPLKKCLVCQEAVQPGNRNRRLNTSILIRYATTSGRINILIDAGKFFYHSALRWFPHFGLRCLDAVIITHSHADAIGGLDDLRDWTNNVQKSVSLYVAKRDLEVMEKTHYYLVDTSVVTPGAAVSNLVFNVMTEEPFHVNGLKVTPTLPVWHGPGYRSLGFRFGNVCYISDVSDIPEETYNLLKDCELLILDALRPDRSSTTHFGLPRALQEVRKIQPKQTLFTGMMHLMNHDKINEELARLHDSEGLDIQLSYDGLCIPINL*

Protein Length: 404

Fln nts: ATGGGGATAACTATGTTGACATCAATACGTTTGCCCGAGTTACCAAACACGAGACAACGCAGTTTCAGTTGGAGAAGCAGCAGGGTTGAGTATCCATACATCTGATACCACGTGGAACGGCCATAGCA_-_ATGTGTTGCTCCCACTCTTCTCTGTCTTTTGCTTCTCTAAGAACACTAACTGCAACTTCTTCCTCAGCCTCGCTACTGGGTTGGAGGCAATTCAACCATGTCACACAGATCTCATTTACCAATCCTCCTTCAAGTTCACTAGTAAACTGTTGTCAGGGGAGACAAAAGCCACATTTCTTTTCAGCGGGGCGGCATTATTATTATTATGCACAGGGGATACATAAACCAGGTCTGATTAACAGACGGTTCAGGCATCCTACACTGTTTATGCAACTTCATTCACAATCAAACAGTGCAAGGCATGTAGATCAAGTTCCTCTGACTGAACATTCTACAACTTCTAATGAAAAGGGCTCAGAACTTATATTCTTGGGAACTGGTACAAGTGAAGGTATTCCTAGAGTGAGCTGCCTCACAGATCCCTTAAAGAAATGTCTGGTTTGCCAAGAAGCAGTCCAACCTGGGAACAGAAATAGAAGATTGAATACAAGTATTCTCATTCGTTATGCCACCACTTCAGGCAGAATTAACATCCTTATAGATGCTGGCAAATTCTTTTATCACAGTGCTCTTCGATGGTTTCCACATTTTGGGTTGAGATGTCTAGATGCTGTGATAATTACTCATTCTCACGCAGATGCAATTGGAGGGCTTGATGATCTACGTGATTGGACAAATAATGTACAAAAATCTGTTTCTCTCTATGTGGCAAAACGAGATCTTGAGGTTATGGAGAAAACTCACTATTATTTGGTAGATACAAGTGTTGTCACACCTGGTGCTGCTGTTTCTAACCTAGTTTTTAATGTCATGACTGAAGAACCCTTCCATGTTAATGGGTTAAAGGTGACTCCCACATTGCCTGTTTGGCATGGACCAGGATATCGCTCTCTTGGATTTCGCTTTGGTAATGTCTGCTACATAAGTGATGTAAGTGACATACCTGAGGAGACATATAACCTTCTCAAGGATTGTGAACTCCTAATACTGGATGCATTGAGGCCTGATCGCTCAAGCACAACACATTTTGGGTTGCCTAGGGCTTTACAAGAAGTTAGGAAAATTCAACCCAAGCAAACTCTCTTCACTGGGATGATGCACTTGATGAATCATGATAAAATCAATGAAGAGCTAGCAAGGTTACACGACTCTGAAGGTCTTGACATCCAACTAAGCTATGATGGATTATGTATTCCTATAAACCTTTGA___GTGC

Fln Alignment:

Contig26658___MCCSHXXXXXXXXXXXXXXXXXXXXLGWRQFNHVTQISFTNPPSSSLVNCCQGRQKPHFFSAGRHYYYYAQGIHKPGLINRRFRHPTLFMQLHSQSN
A9P1A5_______________MCCYHYSLSFASLRTLTTPSSAASLLGRRQLNHATQISFTNPSSSSLVNCCQVRRRPQFFSAGQH-YYYAQGMHKPGLINRRFRHPTLFMQLHSQSN

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
735	12	87			0.992554
736	12			87	0.992554
738		87	12		0.992554
762		12	87		0.992554
764	12			87	0.992554
784	14			85	0.993533
786	14			85	0.993533
1252		86		13	0.999973

SSRs (tot: 1)

Start position	End position	Sequence	Length
1007	1020	ATA ATA ATA ATA AT	14

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain