SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene26614

Length: 3404 nt

UniGene Fasta

>sp_v3.0_unigene26614
AGGGAAAGTCCAAAGAAGCAATGTGGAAAATGCAAAAGTATTGGGAAAGGAGAGGAAGCTCAAAGACTTGGGAAAGGAGGAGGACCAGTAAGCCAATATGGTTATTATAAGCACTGTGAAATTTGCGGGCATTAAAACTATTTACACCTGCGTTTAAAATGGAGTCTACGCTGCATTTAAAATGGAGTCTTTTGGAGCAAAGAAAGGAGGGATTTAGGATTTTGGACATTGCTTGAGTTTGAGCTTTCTTTCGACGAATTTGGCCGAATTCGTGCTTTATTTCGACAAATTTGGGCTATATTCTGAGCTTAAATGGTGGAAATATTGACTGCTTAACCTTACTTATTACTGTTCTCTGTTAGGTTTTCCAAGAATCGCTTATTACTGTTCTAAATAACAGCAGGGATTTATTTTAAGCTTACTCTGGTTACGGTTTGTAGAGCAAGAATGGGGCAGCCTGGGTGGGAAGCTGATAAGATGCTGGATGTGTACATTCACGACTATCTCATAAAACGAAATCTTCTTGCATCTGCCAAGACATTTATGACGGAGGCAAAAGTTTCTCCAGAACCAGTCGCAATTGATGCACCTGGAGGCTTTTTGTTTGAATGGTGGTCTGTGTTTTGGGATATTTTCATCTCACGGACAAACGAGAAACACTCTGAGAAAGCAGCTTCATATGTTCAGGCACAACAAATGAAAGCAAGGGAAATACAATTACAAAAGGAGCAACAGCAAAGGCAACTGCAACAGCAGCTTTATGCCCAGATAAGAAGGAATGGGAATCATCCTTCCTTTAATGGTGCTGCTAACTTCAACAATTCTGAAAATCTGATTGGAAATTCAATGCCCAATGCCATGGTATCAAAAATCCTTGAGGAACGTTTGAAGTCTCCACACCAAAGAGAGGGATTTGATGATCCCACTTTGAAGAGAGTTGGAGAATCTCCATCACATTTCCTAGATGCTAGCAGCACAGTCCTCCATAAAACTGCTTCTAGTCCAGGACAACCTTCTGGGCAGTTGCTGCAGAATACAGCTGGTAACGTTAATTCAGCTTCTCCGCATGGTCAAGCTTGCCCTCAACAAATTCCTGGGAATTCTCAGGGGTCCCTTGTCATCGATTCATCTATGTTTGGAGCACATGGAGCAATGCATCCTAAATCTAATCTGTCAAATCCTGGTCCCAATAGCACTGTACCATTAAATGGGTGGCCAATGACTGGTATGGACCAGCTTCATCCAAGTTTATTACAGGGACAGAAATCTTTTTTGCCATCACCCCAACATCTTCAACAATTTCAGCTCTTGTCTTCACAGCAACAGCGTCAAGTCTTGCTTCAGGCACAGGCATCATCTCTCTCTCCTGTCCTTGGGGAAACGGATCCACGTAAATCTAAGTATTTGTGGCCAGATGGACCGACTGTTAAGGATGGTCAGCCACTTGGGAGTGATAGATCTCAAGGGCTGGGTTCTGAAATGCATGAGACTTCTTCTATTGGAAGGGCAGCATTGCAAGATCAAAATGACATTATGTTCAAGATGACGACAGACCAGCAGCAGCCTTCGTTGTCACAACAACACTTGCAGCAGCAGCAGCAACTGCAACTGCAACAACTACAGCAACAGCAACAACAATATCAACAGAATGCACTAAAAGGTCAGAGTGGAAGAAAAAGGAAGCTTCAATCTTCTTCAGAAGCAGCAAATAGTTCTGGAACTGGCAATACTCCCTGCCTTTCACGAAATTCAGCACCTTCAACTCCATCAGCTCATACACCTGGAGATGTGATGTCAATGGCTGGGACTTTACAACATAATAACAGTGCTAAGAATCTATTGATGTATGGATCAGACAGGACAGTTGGGCTTGCTTCTCCATCAAATCAGCTGGTGGACATTGAGCATTTGGGTGAGGACTGCTCTCTGGATGAAAATGTAGAATCTTATATCTCTCATGATGGTGGAGAACAGAAAGAAAGTGTCTTAGATACTGTGAAGAGTAGTTCTGAAGGGCACAAAATGGGTCCCTCAAAGGGGTTTACTTTCAATGAAGTAGGTTGCCTCCGTGCACACACTAGTAAAGTAGTTTGTTGCCATTTCTCTTCGGATGGAAAGTTGCTAGCAAGTGCTGGGCATGATAAGAAGGCTGTTTTGTGGAATATGGACACTCTAAAATTGGAAAGCACTCTTCAGGAACACAATAATCCTATTACTGATGTTAGGTTCAGTCCAAACTCTACTCATTTGGCTTCATCCTCCCATGACATGACTGTCCGAGTATGGGATGCTAACAATCCTACCTACTCCTTGCGGACATTTATTGGGCATTCAGCCTCAGTCAATTCATTGGATTTCCATCCAACCAATGGTGAACTGCTTTGTTCCTGTGATGACAATAGTGAAATCCGTTATTGGAGTGTTAACCAAGGTTCCTGCAAAAAGGTTTCCAAGGGTGGCAGAGGACAGCTGAGGTTCCAACCTGATCGTGGGCAGTTAATTGCTGCAACAACAGAGCATACAGTTTCCATAATCGATGTTGAGGCTGATAATTGCATATTCTCTTTACAGAGACATAAAAAGCCAGTCCATTCATTGTGTTGGAATGCAATCGGGGATTATGTTGCATCTGTAAGTGAGGATTCTGTGAAAATTTCATCCATGAAAGCTGGGGGAAGATGCGTTCAGGAGATTACCTGCACTGGTAATCCGTTCCAGACTTGTGTCTTCCATCCAAATCATCCGTCACTTTTAATTATTGGTTGTGATCGGACATTTGAGTTCTGGAATATGGCAGAAAACAAGACCATGTCACTGGAATCTCATGATGCTCTAATTACAGCCTTAGCTCAGTCACCTGCGACTGGGATGGTTGCTTCTGCGAGTCATGACAAGTGCGTAAAATTATGGAAGTAATAGCTTGTATTGTATGACAAGCATGTATAGATGCCAGTTTCCTGATGTTATGATAAAATTGGAATCTTTTTGTGGAAATATCGGCACCAACATCTAGTTAGCCATCACTCATAAGGTGGAAGTTGTACCAGGTGATAATCGAAGAACATATTTTCTTTCATGCTCGAATTGAATCATAGTTCATCTTCTTTGCTACCATTAGACATTTCTATACGGTAGCATTGTTAAATCGTGGAAAACAGATCTGAAGCCTTGACATTCCAGAGTATCACTGTATGTTTCTCTGTGAATATTATATTCTGGTGCTAGGAATGGTCGGGTGAAGCTGTCCTCTCCCGAGAAATAGAAACTGGATGAAATTTTGTTCAGTTAAAGCTTAGCCTCATATATTTTTCTTCCTGTTGGTCACACCCTAATCAGACATGAGTGAGGATATAAATTGATATAATGTTCTTATAATATAACCTATAATATGAACTATACTAATT

Ace file of the UniGene sp_v3.0_unigene26614

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	WD-repeat protein, putative n=1 Tax=Ricinus communis RepID=B9RWJ4_RICCO	-	-	0.0	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	24%
Sma3	WD-repeat protein, putative	-	-	1.129e-14	-

Source	Gene names
Sma3	At2g32700; At4g32551; GSVIVT00003077001; GSVIVT00016815001; GSVIVT00032587001; GSVIVT00032588001; GSVIVT00032589001; GSVIVT00033847001; L23H3.30; LOC_Os03g64300; LUG; OJ1293_E04.10; OSIGBa0157K09-H0214G12.8; OSJNBa0033P04.5; OSJNBa0053L11.32; OSJNBa0090K0

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	single-stranded DNA binding	GO:0003697	Molecular Function	-
Sma3	transcription regulator activity	GO:0030528	Molecular Function	-
Sma3	protein heterodimerization activity	GO:0046982	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	embryo development	GO:0009790	Biological Process	-
Sma3	flower development	GO:0009908	Biological Process	-
Sma3		GO:0016481	Biological Process	-
Sma3	cell differentiation	GO:0030154	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	IPR000194	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3	LisH dimerisation motif	IPR006594	-	-
Sma3	Single-stranded DNA-binding protein, SSDP	IPR007591	-	-
Sma3	Sequence-specific single-strand DNA-binding protein	IPR008116	-	-
Sma3	LisH dimerisation motif, subgroup	IPR013720	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Arabidopsis thaliana	NP_001031466.2	leunig-like protein [Arabidopsis thaliana]	0.0	45%
RefSeq	Populus trichocarpa	XP_002299273.1	predicted protein [Populus trichocarpa]	0.0	47%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NPC1

Fln msg: your sequence is longer than subject: 823 - 314

Fln protein: MGQPGWEADKMLDVYIHDYLIKRNLLASAKTFMTEAKVSPEPVAIDAPGGFLFEWWSVFWDIFISRTNEKHSEKAASYVQAQQMKAREIQLQKEQQQRQLQQQLYAQIRRNGNHPSFNGAANFNNSENLIGNSMPNAMVSKILEERLKSPHQREGFDDPTLKRVGESPSHFLDASSTVLHKTASSPGQPSGQLLQNTAGNVNSASPHGQACPQQIPGNSQGSLVIDSSMFGAHGAMHPKSNLSNPGPNSTVPLNGWPMTGMDQLHPSLLQGQKSFLPSPQHLQQFQLLSSQQQRQVLLQAQASSLSPVLGETDPRKSKYLWPDGPTVKDGQPLGSDRSQGLGSEMHETSSIGRAALQDQNDIMFKMTTDQQQPSLSQQHLQQQQQLQLQQLQQQQQQYQQNALKGQSGRKRKLQSSSEAANSSGTGNTPCLSRNSAPSTPSAHTPGDVMSMAGTLQHNNSAKNLLMYGSDRTVGLASPSNQLVDIEHLGEDCSLDENVESYISHDGGEQKESVLDTVKSSSEGHKMGPSKGFTFNEVGCLRAHTSKVVCCHFSSDGKLLASAGHDKKAVLWNMDTLKLESTLQEHNNPITDVRFSPNSTHLASSSHDMTVRVWDANNPTYSLRTFIGHSASVNSLDFHPTNGELLCSCDDNSEIRYWSVNQGSCKKVSKGGRGQLRFQPDRGQLIAATTEHTVSIIDVEADNCIFSLQRHKKPVHSLCWNAIGDYVASVSEDSVKISSMKAGGRCVQEITCTGNPFQTCVFHPNHPSLLIIGCDRTFEFWNMAENKTMSLESHDALITALAQSPATGMVASASHDKCVKLWK*

Protein Length: 824

Fln nts: AGGGAAAGTCCAAAGAAGCAATGTGGAAAATGCAAAAGTATTGGGAAAGGAGAGGAAGCTCAAAGACTTGGGAAAGGAGGAGGACCAGTAAGCCAATATGGTTATTATAAGCACTGTGAAATTTGCGGGCATTAAAACTATTTACACCTGCGTTTAAAATGGAGTCTACGCTGCATTTAAAATGGAGTCTTTTGGAGCAAAGAAAGGAGGGATTTAGGATTTTGGACATTGCTTGAGTTTGAGCTTTCTTTCGACGAATTTGGCCGAATTCGTGCTTTATTTCGACAAATTTGGGCTATATTCTGAGCTTAAATGGTGGAAATATTGACTGCTTAACCTTACTTATTACTGTTCTCTGTTAGGTTTTCCAAGAATCGCTTATTACTGTTCTAAATAACAGCAGGGATTTATTTTAAGCTTACTCTGGTTACGGTTTGTAGAGCAAGA_-_ATGGGGCAGCCTGGGTGGGAAGCTGATAAGATGCTGGATGTGTACATTCACGACTATCTCATAAAACGAAATCTTCTTGCATCTGCCAAGACATTTATGACGGAGGCAAAAGTTTCTCCAGAACCAGTCGCAATTGATGCACCTGGAGGCTTTTTGTTTGAATGGTGGTCTGTGTTTTGGGATATTTTCATCTCACGGACAAACGAGAAACACTCTGAGAAAGCAGCTTCATATGTTCAGGCACAACAAATGAAAGCAAGGGAAATACAATTACAAAAGGAGCAACAGCAAAGGCAACTGCAACAGCAGCTTTATGCCCAGATAAGAAGGAATGGGAATCATCCTTCCTTTAATGGTGCTGCTAACTTCAACAATTCTGAAAATCTGATTGGAAATTCAATGCCCAATGCCATGGTATCAAAAATCCTTGAGGAACGTTTGAAGTCTCCACACCAAAGAGAGGGATTTGATGATCCCACTTTGAAGAGAGTTGGAGAATCTCCATCACATTTCCTAGATGCTAGCAGCACAGTCCTCCATAAAACTGCTTCTAGTCCAGGACAACCTTCTGGGCAGTTGCTGCAGAATACAGCTGGTAACGTTAATTCAGCTTCTCCGCATGGTCAAGCTTGCCCTCAACAAATTCCTGGGAATTCTCAGGGGTCCCTTGTCATCGATTCATCTATGTTTGGAGCACATGGAGCAATGCATCCTAAATCTAATCTGTCAAATCCTGGTCCCAATAGCACTGTACCATTAAATGGGTGGCCAATGACTGGTATGGACCAGCTTCATCCAAGTTTATTACAGGGACAGAAATCTTTTTTGCCATCACCCCAACATCTTCAACAATTTCAGCTCTTGTCTTCACAGCAACAGCGTCAAGTCTTGCTTCAGGCACAGGCATCATCTCTCTCTCCTGTCCTTGGGGAAACGGATCCACGTAAATCTAAGTATTTGTGGCCAGATGGACCGACTGTTAAGGATGGTCAGCCACTTGGGAGTGATAGATCTCAAGGGCTGGGTTCTGAAATGCATGAGACTTCTTCTATTGGAAGGGCAGCATTGCAAGATCAAAATGACATTATGTTCAAGATGACGACAGACCAGCAGCAGCCTTCGTTGTCACAACAACACTTGCAGCAGCAGCAGCAACTGCAACTGCAACAACTACAGCAACAGCAACAACAATATCAACAGAATGCACTAAAAGGTCAGAGTGGAAGAAAAAGGAAGCTTCAATCTTCTTCAGAAGCAGCAAATAGTTCTGGAACTGGCAATACTCCCTGCCTTTCACGAAATTCAGCACCTTCAACTCCATCAGCTCATACACCTGGAGATGTGATGTCAATGGCTGGGACTTTACAACATAATAACAGTGCTAAGAATCTATTGATGTATGGATCAGACAGGACAGTTGGGCTTGCTTCTCCATCAAATCAGCTGGTGGACATTGAGCATTTGGGTGAGGACTGCTCTCTGGATGAAAATGTAGAATCTTATATCTCTCATGATGGTGGAGAACAGAAAGAAAGTGTCTTAGATACTGTGAAGAGTAGTTCTGAAGGGCACAAAATGGGTCCCTCAAAGGGGTTTACTTTCAATGAAGTAGGTTGCCTCCGTGCACACACTAGTAAAGTAGTTTGTTGCCATTTCTCTTCGGATGGAAAGTTGCTAGCAAGTGCTGGGCATGATAAGAAGGCTGTTTTGTGGAATATGGACACTCTAAAATTGGAAAGCACTCTTCAGGAACACAATAATCCTATTACTGATGTTAGGTTCAGTCCAAACTCTACTCATTTGGCTTCATCCTCCCATGACATGACTGTCCGAGTATGGGATGCTAACAATCCTACCTACTCCTTGCGGACATTTATTGGGCATTCAGCCTCAGTCAATTCATTGGATTTCCATCCAACCAATGGTGAACTGCTTTGTTCCTGTGATGACAATAGTGAAATCCGTTATTGGAGTGTTAACCAAGGTTCCTGCAAAAAGGTTTCCAAGGGTGGCAGAGGACAGCTGAGGTTCCAACCTGATCGTGGGCAGTTAATTGCTGCAACAACAGAGCATACAGTTTCCATAATCGATGTTGAGGCTGATAATTGCATATTCTCTTTACAGAGACATAAAAAGCCAGTCCATTCATTGTGTTGGAATGCAATCGGGGATTATGTTGCATCTGTAAGTGAGGATTCTGTGAAAATTTCATCCATGAAAGCTGGGGGAAGATGCGTTCAGGAGATTACCTGCACTGGTAATCCGTTCCAGACTTGTGTCTTCCATCCAAATCATCCGTCACTTTTAATTATTGGTTGTGATCGGACATTTGAGTTCTGGAATATGGCAGAAAACAAGACCATGTCACTGGAATCTCATGATGCTCTAATTACAGCCTTAGCTCAGTCACCTGCGACTGGGATGGTTGCTTCTGCGAGTCATGACAAGTGCGTAAAATTATGGAAGTAA___TAGCTTGTATTGTATGACAAGCATGTATAGATGCCAGTTTCCTGATGTTATGATAAAATTGGAATCTTTTTGTGGAAATATCGGCACCAACATCTAGTTAGCCATCACTCATAAGGTGGAAGTTGTACCAGGTGATAATCGAAGAACATATTTTCTTTCATGCTCGAATTGAATCATAGTTCATCTTCTTTGCTACCATTAGACATTTCTATACGGTAGCATTGTTAAATCGTGGAAAACAGATCTGAAGCCTTGACATTCCAGAGTATCACTGTATGTTTCTCTGTGAATATTATATTCTGGTGCTAGGAATGGTCGGGTGAAGCTGTCCTCTCCCGAGAAATAGAAACTGGATGAAATTTTGTTCAGTTAAAGCTTAGCCTCATATATTTTTCTTCCTGTTGGTCACACCCTAATCAGACATGAGTGAGGATATAAATTGATATAATGTTCTTATAATATAACCTATAATATGAACTATACTAATT

Fln Alignment:

Contig26614___SLDENVESYISHDGGEQKE------SVLDTVKSSSEGHKMGPSKGFTFNE--------VGCLRAHTSKVVCCHFSSDGKLLASAGHDKKAVLWNMDTLKLESTLQEHNNPITDVRFSPNSTHLASSSHDMTVRVWDANNPTYSLRTFI-GHSASVNSLDFHPTNGELLCSCDDNSEIRYWSVNQGSCKKVSKGGRG-----QLRFQPDRGQ-LIAATTEHTVSIIDVEADNCIFSLQRHKKPVHSLCWNAIGDYVAS
A9NPC1_______________SADKSVRIWSAGDGSAKRELQGHAEGVSDMAWSSDSHYVCSASDDKTLRIWDVHTGDCIKTLKGHTNYVFCVNFNPQSNLIVSGSFDETVRIWDVRTGKCLKVLPAHSDPVTAVHFNRDGSLIVSSSYDGLCRIWDSAT-GHCLKTLIDDENPPVSFVNFSPNGKFILAGTLDNT-LRLWNFATGKFLKTYTGHVNSKYCISSTFSVTNGKYIVSGSEDNCVYLWDLQARNIVQKLEGHTDTVISVSCHPTENKIAS

SNPs (tot: 44)

Position	A %	C %	G %	T %	Probability
130		66		33	0.997452
203	33	66			0.997452
399	57			42	1.0
401	11	88			0.923564
403			88	11	0.923564
405			88	11	0.923564
488	14			85	0.993533
489	14		85		0.993533
491	85		14		0.993533
492		85		14	0.993533
556	80			20	0.995493
557	80			20	0.995493
558	80	20			0.995493
560		20		80	0.995493
803		25		75	0.996473
1049		80		20	0.995493
1109	20		80		0.995493
1110		20	80		0.995493
1111	20		80		0.995493
1112			80	20	0.995493
1231	20			80	0.995493
1232			80	20	0.995493
1234	80			20	0.995493
1293	16	83			0.994512
1302		16		83	0.994512
1737		40		60	1.0
1809			14	85	0.993533
1926		75		25	1.0
2306		16		83	0.994512
2354	80		20		0.995493
2468	20		80		0.995493
2495			40	40	1.0
2504	80			20	0.995493
2532			42	57	1.0
2633	88		11		0.923564
2665		88	11		0.923564
2666		88	11		0.923564
2667	77		22		0.999999
2700	11		88		0.923564
3058	88		11		0.999937
3059	88		11		0.999937
3060			11	88	0.999937
3315		14		85	0.993533
3317		16		83	0.994512

SSRs (tot: 1)

Start position	End position	Sequence	Length
1587	1601	GCA GCA GCA GCA GCA	15

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain