SustainPineDB

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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene26578

Length: 353 nt

UniGene Fasta

>sp_v3.0_unigene26578
ATGTTCAAGTTCTTACAACTGGATTCTGGCCAACTCAAAGTTCGAGTGCTTGTACATTCCCTGCTGAGATTCAACTTTGTTGTGACGTTTTCCGTACTTTTTACATGAACAAACACAGTGGACGACGTTTGACTTGGCAAACAAACATGGGCACTGCTGATTTGAAGGCACAATTTGGAGTGAAGAAACGAGAGTTGAACGTGACGACGCATCAGATGTGCATTCTTCTTTTGTTCAACAGCACCAACGAACTGAGCTCAAAGACATTCAAGAAGGAACCAACATTCCAATTCCAGACCTGAAACGCAATCTACTGGCGCTCTCTTGTGGAAAATACAGAGTCTTGGCAAAGG

Ace file of the UniGene sp_v3.0_unigene26578

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cullin C n=1 Tax=Dictyostelium fasciculatum RepID=F4PH56_9MYCE	-	-	2.0e-30	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	60%

Source	Gene names
Sma3	At1g26830; At1g69670; CHLREDRAFT_127081; CUL1; GSVIVT00020935001; GSVIVT00036990001; H0306F03.4; MICPUCDRAFT_46389; OJ1118_G04.26; OJ1590_E05.14; OSJNBa0033G05.2; OSJNBa0063C18.16; OSJNBb0024K03.4; Os02g0746000; Os04g0643000; Os08g0170900; OsI_08927; OsI_

Source	GOs	Term	Type	Identity
Sma3	cullin-RING ubiquitin ligase complex	GO:0031461	Cellular Component	-
Sma3	ligase activity	GO:0016874	Molecular Function	-
Sma3	ubiquitin protein ligase binding	GO:0031625	Molecular Function	-
Sma3	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Cullin, N-terminal	IPR001373	-	-
Sma3	Winged helix-turn-helix transcription repressor DNA-binding	IPR011991	-	-
Sma3	Cullin homology	IPR016158	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G69670.1	CUL3B, ATCUL3B cullin 3B chr1:26202169-26204442 REVERSE LENGTH=732	2.0e-31	57%
RefSeq	Arabidopsis thaliana	NP_177125.3	cullin 3B [Arabidopsis thaliana]	2.0e-31	57%
RefSeq	Populus trichocarpa	XP_002315795.1	predicted protein [Populus trichocarpa]	1.0e-30	56%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LNS8

Fln msg: Overlapping hits, possible frame ERROR between 275 and 248, Distance to subject end: 121 aas, your sequence is shorter than subject: 117 - 735

Fln protein: VQVLTTGFWPTQSSSACTFPAEIQLCCDVFRTFYMNKHSGRRLTWQTNMGTADLKAQFGVKKRELNVTTHQMCILLLFNSTxxxxxxxxxxxTNIPIPDLKRNLLALSCGKYRVLAK

Protein Length: 118

Fln nts: ATGTTCAAGTTCTTACAACTGGATTCTGGCCAACTCAAAGTTCGAGTGCTTGTACATTCCCTGCTGAGATTCAACTTTGTTGTGACGTTTTCCGTACTTTTTACATGAACAAACACAGTGGACGACGTTTGACTTGGCAAACAAACATGGGCACTGCTGATTTGAAGGCACAATTTGGAGTGAAGAAACGAGAGTTGAACGTGACGACGCATCAGATGTGCATTCTTCTTTTGTTCAACAGCACCxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxACCAACATTCCAATTCCAGACCTGAAACGCAATCTACTGGCGCTCTCTTGTGGAAAATACAGAGTCTTGGCAAAGG

Fln Alignment:

Contig26578___VQVLTTGFWPTQSSSACTFPAEIQLCCDVFRTFYMNKHSGRRLTWQTNMGTADLKAQFGV-KKRELNVTTHQMCILLLFNSTNxxxxxxxxxGTNIPIPDLKRNLLALSCGKYR-VLAK
B8LNS8_______________VQVLTTGSWPTQTGARCNLPKEILAVCDKFKAYYLSTHTGRRLTWQTNMGTADLKATFGKGQKHELNVSTYQMCILILFNSADxxxxxxxxxATDIPAPDLKRCLQSLACVKGRNVLGK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain