SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene26260

Length: 531 nt

UniGene Fasta

>sp_v3.0_unigene26260
ACAACGTCAAGCGCTTCCGTAAGGGTCAGTGCCCCATCGTCGAGCGTCTTTGCAATCCCTCATGATGCACGGTAGAAACAACGGCAGAAGCTGATGGCTGTCCGTATTGTCAAGCATGCCTTCGAGATCATCCACTTGCTGACTGACAAGAACCCAATCCAGGTTCTTGTTGAGGCCATCATCAACTCTGGTCCCCGTGAGGACTCCACTAGGATTGGTTCTGCTGGTACTGTCAGAAGACAGGCAGTCGACGTTTCTCCTCTGCGTCGTGTCAACCAGGCCCTCTGGCTCTTGACCACTGGTGCTCGTGAGGCTGCTTTCAGAAGCTCCAAGACCATTGCTGAGTGCCTCGCCGACGAGCTCATCAATGCTTCTAAGGAGTCTTCCAACAGCTTTGCCATCAAGAAGAAAGACGAGCTTGAGCGTGTTGCCAAGTCCAACAGATAAACGTGTAGTTACTTCCTCTTTTATTCTCTTGTCTGGTGCGGGCTCTTGCCTAGAACTTCAAAAGAGAAATAAAACCTCCTACCC

Ace file of the UniGene sp_v3.0_unigene26260

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative 40S ribosomal protein RPS5 n=1 Tax=Phoronis muelleri RepID=B2YI07_9BILA	-	-	0.0	88%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	85%
Sma3	40S ribosomal protein S5	-	-	1.535e-21	-

Source	Gene names
Sma3	At2g37270; At3g11940; F26K24.23; F3G5.6; GSVIVT00025458001; GSVIVT00026702001; LOC_Os11g29190; MEC18.4; MICPUCDRAFT_48485; MICPUN_90425; OSJNOa264G09.6; OSTLU_12674; Os01g0100700; Os11g0482000; OsI_00008; OsI_36106; OsJ_00007; OsJ_33893; Ot07g00060; P0402

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	small ribosomal subunit	GO:0015935	Cellular Component	-
Sma3	cytosolic small ribosomal subunit	GO:0022627	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosomal protein S7	IPR000235	-	0.0	-
Sma3	Ribosomal protein S7, eukaryotic/archaeal	IPR005716	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G37270.1	ATRPS5B, RPS5B ribosomal protein 5B chr2:15647883-15649042 REVERSE LENGTH=207	83%
RefSeq	Arabidopsis thaliana	NP_001031502.1	40S ribosomal protein S5-1 [Arabidopsis thaliana]	83%
RefSeq	Populus trichocarpa	XP_002322748.1	predicted protein, partial [Populus trichocarpa]	83%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NRE6

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 149 - 198

Fln protein: TTSSASVRVSAPSSSVFAIPHDAR*KQRQKLMAVRIVKHAFEIIHLLTDKNPIQVLVEAIINSGPREDSTRIGSAGTVRRQAVDVSPLRRVNQALWLLTTGAREAAFRSSKTIAECLADELINASKESSNSFAIKKKDELERVAKSNR*

Protein Length: 150

Fln nts: ACAACGTCAAGCGCTTCCGTAAGGGTCAGTGCCCCATCGTCGAGCGTCTTTGCAATCCCTCATGATGCACGGTAGAAACAACGGCAGAAGCTGATGGCTGTCCGTATTGTCAAGCATGCCTTCGAGATCATCCACTTGCTGACTGACAAGAACCCAATCCAGGTTCTTGTTGAGGCCATCATCAACTCTGGTCCCCGTGAGGACTCCACTAGGATTGGTTCTGCTGGTACTGTCAGAAGACAGGCAGTCGACGTTTCTCCTCTGCGTCGTGTCAACCAGGCCCTCTGGCTCTTGACCACTGGTGCTCGTGAGGCTGCTTTCAGAAGCTCCAAGACCATTGCTGAGTGCCTCGCCGACGAGCTCATCAATGCTTCTAAGGAGTCTTCCAACAGCTTTGCCATCAAGAAGAAAGACGAGCTTGAGCGTGTTGCCAAGTCCAACAGATAA___ACGTGTAGTTACTTCCTCTTTTATTCTCTTGTCTGGTGCGGGCTCTTGCCTAGAACTTCAAAAGAGAAATAAAACCTCCTACCC

Fln Alignment:

Contig26260___QKLMAVRIVKHAFEIIHLLTDKNPIQVLVEAIINSGPREDSTRIGSAGTVRRQAVDVSPLRRVNQALWLLTTGAREAAFRSSKTIAECLADELINASKESSNSFAIKKKDELERVAKSNR
A9NRE6_______________KKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAIINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIFLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEVERVAKANR

SNPs (tot: 4)

Position	C %	G %	T %	Probability
376	25		75	0.996473
415	75	25		0.996473
494	66		33	0.997452
495	33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain