SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene25839

Length: 456 nt

UniGene Fasta

>sp_v3.0_unigene25839
CAGGACGGTGTGCGCTTGAAGAAGTACCGTGGCATGGGCTCGATCGAGGCCATGAGCAAGGGTTCGTCCAAGCGTTACTTCGCGCAGTCGGCGACCGTCAAGGTCGCGCAGGGTGTGAGCGGTGCCGTCGTGGACAAGGGCTCGCTCAAGAAGTACATCCCGTACTTGCAGCAGGGTATCATGCACGGTCTCCAGGACTTGGGCCAGTCGAGCATGACTGCGCTCCACCAGGCGCTCGAGAACGAGGAGCTCCGCTTCGAGCTGCGTACGCCTGCCGCGCAGCGTGAGGGCAGCGTGCACTCGCTGTACAGCTACGAGAAGCGTCTCTACTAAGCTATCCTGCATTTCGTGATCTCCTGACCTGACAACCGAGACTCAAGGAACACCAGCGATGCAGAAGACGTCGACTCCGACTCGCGACTCGTGCCACGCCAGTGTATCCGCTTCTCGGGTATT

Ace file of the UniGene sp_v3.0_unigene25839

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Inosine-5'-monophosphate dehydrogenase n=1 Tax=Phytophthora infestans T30-4 RepID=D0N723_PHYIT	-	-	1.00053e-42	81%
FL-Next	sp=Inosine-5'-monophosphate dehydrogenase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	56%
Sma3	Inosine-5'-monophosphate dehydrogenase	-	-	1.808e-11	-

Source	ECs	Term	Type	e value	Identity
Sma3	IMP dehydrogenase.	EC:1.1.1.205	-	2.208e-23	-

Source	KEGGs	Term	e value	Identity
Sma3	Purine metabolism	00230	2.208e-23	%
Sma3	Drug metabolism - other enzymes	00983	2.208e-23	%
Sma3	Biosynthesis of alkaloids derived from histidine and purine	01065	2.208e-23	%
Sma3	Metabolic pathways	01100	2.208e-23	%
Sma3	Biosynthesis of secondary metabolites	01110	2.208e-23	%

Source	Gene names
Sma3	At1g16350; At1g16350/F3O9_15; At1g79470; CHLREDRAFT_193467; F3O9.15; GSVIVT00002094001; IMPDH; IMPDH1; IpdH; LOC_Os03g56800; MICPUCDRAFT_27930; MICPUN_107152; OSJNBa0091J19.1; OSTLU_119530; Os03g0780500; OsI_13742; OsI_13758; OsJ_12809; Ot02g01560; PHATRD

Source	GOs	Term	Type	Identity
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	IMP dehydrogenase activity	GO:0003938	Molecular Function	-
Sma3	potassium ion binding	GO:0030955	Molecular Function	-
Sma3	GMP biosynthetic process	GO:0006177	Biological Process	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Cystathionine beta-synthase, core	IPR000644	-	-
Sma3	IMP dehydrogenase/GMP reductase	IPR001093	-	-
Sma3	IMP dehydrogenase	IPR005990	-	-
Sma3	Aldolase-type TIM barrel	IPR013785	-	-
Sma3	IMP dehydrogenase / GMP reductase, conserved site	IPR015875	-	-
Sma3	IMP dehydrogenase-related	IPR018529	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G16350.1	Aldolase-type TIM barrel family protein chr1:5590951-5592872 FORWARD LENGTH=502	1.0e-34	54%
RefSeq	Arabidopsis thaliana	NP_173085.1	IMP dehydrogenase [Arabidopsis thaliana]	1.0e-34	54%
RefSeq	Populus trichocarpa	XP_002315077.1	predicted protein [Populus trichocarpa]	1.0e-34	53%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQF1

Fln msg: your sequence is shorter than subject: 111 - 513

Fln protein: QDGVRLKKYRGMGSIEAMSKGSSKRYFAQSATVKVAQGVSGAVVDKGSLKKYIPYLQQGIMHGLQDLGQSSMTALHQALENEELRFELRTPAAQREGSVHSLYSYEKRLY*

Protein Length: 112

Fln nts: CAGGACGGTGTGCGCTTGAAGAAGTACCGTGGCATGGGCTCGATCGAGGCCATGAGCAAGGGTTCGTCCAAGCGTTACTTCGCGCAGTCGGCGACCGTCAAGGTCGCGCAGGGTGTGAGCGGTGCCGTCGTGGACAAGGGCTCGCTCAAGAAGTACATCCCGTACTTGCAGCAGGGTATCATGCACGGTCTCCAGGACTTGGGCCAGTCGAGCATGACTGCGCTCCACCAGGCGCTCGAGAACGAGGAGCTCCGCTTCGAGCTGCGTACGCCTGCCGCGCAGCGTGAGGGCAGCGTGCACTCGCTGTACAGCTACGAGAAGCGTCTCTACTAA___GCTATCCTGCATTTCGTGATCTCCTGACCTGACAACCGAGACTCAAGGAACACCAGCGATGCAGAAGACGTCGACTCCGACTCGCGACTCGTGCCACGCCAGTGTATCCGCTTCTCGGGTATT

Fln Alignment:

Contig25839___QDGVRLKKYRGMGSIEAMSKGSSKRYFAQSATVKVAQGVSGAVVDKGSLKKYIPYLQQGIMHGLQDLGQSSMTALHQALENEELRFELRTPAAQREGSVHSLYSYEKRLY
B8LQF1_______________QDGKRLKKYRGMGSLEAMAKGSDTRYLGDKSKLKIAQGVSGVVADKGSVLRLIPYTMHAVKQGFQDLGVSSLQAAHNNCKSGVLRLEARTGAAQVEGGVHGLVSYEKKRF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain