SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene25001

Length: 1554 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene25001 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Abhydrolase_3 multi-domain protein	-	-	0.0	38%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	75%
Sma3	CXE carboxylesterase	-	-	6.591e-09	-

Source	ECs	Term	Type	e value	Identity
Sma3	Carboxylesterase.	EC:3.1.1.1	-	3.123e-08	-

Source	KEGGs	Term	e value	Identity
Sma3	Tropane, piperidine and pyridine alkaloid biosynthesis	00960	3.123e-08	%
Sma3	Drug metabolism - other enzymes	00983	3.123e-08	%
Sma3	Metabolic pathways	01100	3.123e-08	%
Sma3	Biosynthesis of secondary metabolites	01110	3.123e-08	%

Source	Gene names
Sma3	At5g06570; At5g06570/F15M7_10; At5g16080; At5g62180; CXE3; CXE4; CXE9; F1N13_220; GLP6; GSVIVT00004581001; GSVIVT00027106001; GSVIVT00038197001; LOC_Os03g15270; LOC_Os03g57640; OJ1112_E06.7; OSJNBa0054F02.47; OSJNBa0087O09.15; Os01g0155000; Os03g0258200;

Source	GOs	Term	Type	Identity
Sma3	carboxylesterase activity	GO:0004091	Molecular Function	-
Sma3	hydrolase activity	GO:0016787	Molecular Function	-
Sma3	metabolic process	GO:0008152	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Lipase, GDXG, active site	IPR002168	-	0.0	-
Sma3	Alpha/beta hydrolase fold-3	IPR013094	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9P1U1

Fln msg:

Fln protein: MEEVLENVGGVAKVDRDGTLLSQEDHRLFQMLCNYFVQTEAETEVTSKDAVLNERLGLWVRLYLPSSHLQQHPQTRRLPVIVYFPGGGFCLASPSLPEYHNFGQTLAATVGAIVVSVAYRLAPEHRLPAAYDDCITALQWVNSHAGAGGDFEQDAWLESFADFSAVYLMGDSAGANIAHHVVALRGGVEAWSPIRLRGSILVQPFFGAEQRTRSESECPRDAVLTLELTDAFWRLSLPLGSNRDHPFSNPWSPGAPKLEEISMPPSLVAIGGRDILRDRDHEYSDLLKQKGKSVEVVVVEEEEHAFYILRPKSQSFQRLCQQISRFISAVHTDNDTF*

Protein Length: 339

Fln nts: GCAGCCAAGAAGTAAAGAAGCGAGCGGTTGATTGGGTGGTATTTTAACAGTAGCGCATGAAATCCCTTGCCAACTAGTCTGCCTTTCAGAAGCTTTGCAACGACATGCTGGATAGCATTCTGCCCAAAGAAAATTGAGTAGTTTTTGTTGAGAAACAAATAACGAGGACAGAGCGGGGAGATAGAATATCAGTGGTGAGGAAAGGAAAACGTTTGGGCATCGCGGTTTTA_-_ATGGAAGAAGTACTGGAGAATGTTGGAGGAGTTGCTAAGGTGGACAGAGATGGCACACTTTTATCTCAAGAAGATCACAGACTCTTCCAAATGTTATGCAACTATTTCGTGCAAACAGAAGCGGAAACTGAGGTCACGAGTAAAGACGCTGTGTTGAATGAGAGGCTGGGGTTGTGGGTTCGACTCTACTTGCCCTCGTCTCACCTCCAACAGCACCCACAAACGCGCCGCCTACCGGTAATCGTGTATTTCCCCGGCGGCGGCTTCTGCCTAGCCTCCCCCTCCCTGCCGGAGTATCACAACTTCGGTCAGACGTTGGCGGCGACTGTAGGTGCGATCGTTGTCTCCGTGGCTTACAGATTGGCTCCGGAGCACCGCCTACCCGCCGCCTACGACGACTGCATCACGGCACTCCAGTGGGTGAACTCACATGCGGGAGCCGGAGGAGACTTCGAACAAGACGCGTGGCTCGAGTCCTTCGCGGACTTTTCCGCGGTGTATCTGATGGGAGACAGCGCTGGTGCCAACATCGCACATCACGTTGTGGCGCTGCGTGGCGGTGTTGAAGCATGGAGCCCCATCAGGTTGAGAGGGTCGATACTGGTTCAGCCCTTCTTTGGCGCCGAGCAACGCACACGGTCGGAGAGCGAGTGCCCGCGAGACGCGGTTCTCACTCTGGAGCTGACCGACGCCTTTTGGCGGCTGTCTCTCCCACTGGGCAGCAACAGAGATCATCCATTCAGCAACCCTTGGAGCCCCGGAGCGCCAAAGCTGGAAGAGATTTCGATGCCTCCGTCGCTGGTGGCCATCGGTGGCAGAGATATTCTGAGAGATCGGGATCACGAGTACAGTGATTTGTTGAAGCAGAAAGGGAAAAGCGTTGAGGTTGTGGTGGTGGAGGAAGAAGAGCACGCCTTCTATATACTCCGACCCAAATCTCAGTCTTTTCAACGACTCTGTCAACAAATCTCCCGTTTCATCTCCGCAGTTCATACAGACAACGATACCTTCTAG___AGGGTCGCTATAAATTTTAATGCTTAGAATAATGCATTTCTGACTATGTAAGCAGATTATCTCACTTTGTTAATGTGGAGTTACCTCAACCAGTTCAGGTTGTAAGAGGTACTTCTATCATGTCAGGAGGTTAATTTCAGTGCTAAAATTGCTGTTGGGATAATCCCATTGCACTTAGAGTTTACTGCAGCTAGATCCGGTTTGAATTATGTACCTCTATTATGTGAAGAGATAATTGCACTAGAGTTTAATACAGCTAAATCTGGTTTGAATTATGTACTTCTATTATGTTACGAGATTGATTATGTCA

Fln Alignment:

Contig25001___MEEVLENVGGVAKVDRDGTLLSQEDHRLFQMLCNYFVQTEAETEVTSKDAVLNERLGLWVRLYLPSSHLQQHPQTRRLPVIVYFPGGGFCLASPSLPEYHNFGQTLAATVGAIVVSVAYRLAPEHRLPAAYDDCITALQWVNSHAGAGGDFEQDAWLESFADFSAVYLMGDSAGANIAHHVVALRGGVEAWSPIRLRGSILVQPFFGAEQRTRSESECPRDAVLTLELTDAFWRLSLPLGSNRDHPFSNPWSPGAPKLEEISMPPSLVAIGGRDILRDRDHEYSDLLKQKGKSXXXXXXXXXEHAFYILRPKSQSFQRLCQQISRFISAVHT
A9P1U1_______________MEEVV-NVGGILKVYRDGTIFRVEDPRMFVK-----ASLQGEGDVASKDVVLNEKLGLWVRLYLPSSHLQQQTEKRRLPLIVYFHGGGFCVASPALPDFHNFTLKLAATVGAIVVSVAYRLAPEHRLPAAYDDCISALQWVNSHAGDGGDFKHDPWLESYADFSAVYLMGDSAGGNIAHHVVALRGGVEAWNPIKLKGSILVEPFFGAEQRTLSESECPCDAVLNLELSDACWRLSLPVGSDRDHPFSYPCSPAAPKLEKISLPPLLVAIGGRDMLRDRDHEYCELLKQHGKSVEVVVFGEEEHGFYVVRPQSQSCERLIQEISRFISPVHT

SNPs (tot: 29)

Position	A %	C %	G %	T %	Probability
140		33	66		0.997452
234	16	83			0.994512
265	66	33			1.0
459		80		20	0.995493
568		25	75		0.996473
569		25	75		0.996473
570		25	75		0.996473
571	25	75			0.996473
676	16			83	0.994512
865		16		83	0.994512
977		85		14	0.993533
1143			80	20	0.995493
1144			20	80	0.995493
1145		80	20		0.995493
1177	83	16			0.994512
1199	16		83		0.994512
1248			16	83	0.994512
1284		83		16	0.994512
1286	83			16	0.994512
1288		83	16		0.994512
1314			80	20	0.995493
1339			66	33	0.997452
1363		60		40	1.0
1364	60		40		1.0
1447		20		80	0.995493
1451			80	20	0.995493
1472			66	33	0.997452
1490		66	33		0.997452
1504		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain