SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene24817

Length: 1648 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene24817

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[BK] COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain	-	-	3.0e-20	36%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	57%
Sma3	Bromodomain-containing protein, putative	-	-	7.124e-26	-

Source	ECs	Term	Type	e value	Identity
Sma3	Histone acetyltransferase.	EC:2.3.1.48	-	6.38e-21	-

Source	Gene names
Sma3	At1g06230; At1g17790; At1g73150; At5g46550; At5g46550/F10E10_2; F2H15.2; F3N23.35; F9P14.9; GSVIVT00005742001; GSVIVT00007222001; GSVIVT00018701001; GSVIVT00020563001; GSVIVT00027786001; GTE3503; GTE901; GTE902; GTE904; GTE906; GTE910; GTE911; OJ1163_G04.

Source	GOs	Term	Type	Identity
Sma3	kinase activity	GO:0016301	Molecular Function	-
Sma3	histone binding	GO:0042393	Molecular Function	-
Sma3	DNA mediated transformation	GO:0009294	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Bromodomain	IPR001487	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: D5ADB8

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 49 aas, putative chimeric sequence, your sequence is longer than subject: 255 - 130

Fln protein: MMTPRFMNPPFDGRTQRHRGPDGRFLPLESALENPYQGLMKHCTSLLKTLMNHKFGYVFNEPVDPVALGVPDYFTVITSPMDLGTIKAKLQDSVYSSPLEFAADVRLTFANALKYNPPGDTVHNMAKTLSRIFENKWKRIEKKMASVDSSGMCYNKPNSPGGGYESKQVVVMTPESLQTIIQAFIEWADNIPEPVLDFLETHTTNMADSGKEMELDLNALSNEQLCELLGLVRSCLEVGDEGFTNAVVKIETDA*

Protein Length: 256

Fln nts: AGTCTAGAGAATCTATAAGTCTGTGCCTCTCTGGTCGAAAGTCTCTCCCGAATACCACACCATTTCAACGGCGAAGCAACCGACACCCCTGAAATCCCCTTCACACGAATTTCTGAGCTGGGGCCGGTATTGTGTAGCAGCAGG_-_ATGATGACGCCAAGGTTTATGAATCCCCCCTTCGACGGAAGAACACAGAGGCACCGCGGGCCCGATGGAAGATTTCTACCCCTGGAATCGGCCCTTGAAAATCCTTACCAGGGCCTCATGAAGCACTGCACATCCCTGCTAAAGACGCTAATGAATCACAAATTTGGTTATGTTTTTAACGAGCCCGTCGATCCCGTGGCCCTGGGGGTTCCCGACTATTTCACTGTTATTACCTCGCCCATGGATTTGGGCACCATCAAGGCAAAATTGCAGGACAGCGTTTATTCAAGCCCTCTCGAGTTTGCTGCTGATGTGAGGCTAACTTTCGCCAACGCCCTGAAATATAACCCTCCTGGCGATACGGTTCACAATATGGCCAAAACCCTAAGCAGGATTTTCGAGAACAAGTGGAAGAGGATTGAGAAAAAAATGGCTAGTGTTGATTCATCCGGGATGTGTTATAACAAGCCCAATAGCCCAGGCGGTGGCTACGAGTCCAAACAAGTCGTGGTCATGACGCCTGAGAGCCTGCAGACCATTATCCAGGCTTTCATTGAGTGGGCAGACAATATTCCTGAGCCGGTTCTTGATTTTCTAGAGACTCACACGACAAACATGGCGGACAGTGGCAAAGAAATGGAATTGGATTTGAATGCCTTGAGCAATGAGCAGTTGTGTGAACTGCTAGGCCTTGTGAGGAGCTGTTTAGAGGTCGGCGATGAAGGGTTTACAAATGCAGTGGTGAAGATTGAGACTGATGCTTGA___GATAAACTAGCTGCTATTGAATTTATTAAAGGAAAAAAGCTTCCTTTTGAAGGAACTCATTTGCTGAAACAATTCTGGAAGCTATTGATAAACTGGTCAAGCAGTAAACTATTAATCTCGTCAGGAAACTGAGAGGAAATTGCAGCTGGGAAAAACTTATCAAGGTTGAATCTCGAGAGGAAGTTGAAGTTGAAATCTGGAAAAATATAGGCCAATGTGAAAGTTGTGTGTATCTGGCTTCAGAAAAGCCTGTTAGCAAGACGCGAGAAAGCCTAGTAATTAATTCAAAGAATTTTTGATACCGAGGGATCTCTGCTTGGTCGCATAAAAATACAGGTCAAAGTAAGCCGGTTTCTTCTCAACGTTTCTTCGCAGTTTATATTGTAGGAAAGTGAAACCCTTGGAGAGCAGCATCATATGTTTATGAAAACAGGACAACTTTGAGTCTAATGGGAATTTTGGAATTATTTTCTTAAACAATTTTGGTGATTTGGGCTTTTGGTGGCTGATGAAAATGGTGATGTGGAAGTATATAAATCAACTAGCCTTCAGGAATAATTGCCTCTTAGTGTTAGGTCATAAGCTCTATAAATTTGGTGATCCCCAAATTGGACTACGGGGACTGATAATCCCCTAATTAACTTCTCTGCTGATGTAAAGCTTCTTTGACTAGTCTCCGGACTGATATAACTTTCGGAGTAACTTGTTTGCCAATGTAAAGTTTTGAGATTTGATCATG

Fln Alignment:

Contig24817___MTPESLQTIIQAFIEWADNIPEPVLDFLETHTTNMADSGKEMELDLNALSNEQLCELLGLVRSCLEVGDEGFTNAVVKIETDA*DKLAAIE-FIKGKKLP
D5ADB8_______________MASDCIQTIIRALWEWADCIPEPVIDFIEKHKTSMTDSGDEMELDLNSLSKEQLWELLRLVKSYSEGRDQGFASESVKTQTDA----AELERKSKQKKLP

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
128		50		50	1.0
173	33	66			0.997452
246		33		66	0.997452
398	33	66			0.997452
660		33		66	1.0
690		33		66	0.997452
1067	80	20			0.995493
1397		16	83		0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain