SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene24739

Length: 2236 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene24739
ATGGGGGCAGTTAAGAGCGGCCTGCAGTTCTCGTCATCACTGGGCACGGGAATCCAACGAAAGAGAAAAAGAAGAGAAAATGTCATCTGCGTTCTGTGCGAGGCGAAGCTGAAGTGCAGAGTGTTGGAATCGAGATTTTTATGAATGCCGAGGGTTTGATCCGTTTCGAAAATTCCAGCCAAGGCTGTTGTAGCGGAGACTCCGAGAGACTGAAGGAAAAGAAAAGGTTCAGGATGGTGTTAAACAAATGAAAGCAGTAAAGTTTAAACATTCAAAGCAAGGGGTCGTCATCTTGCAATCAATGCTGCAATTGGCAACAGTGTAGAACTTTGTAATGACAAAGATTGCAATGATCATGTATTTTGTTGGCTGTTTGGATGAAGGCGCTGCATGATTACATTGTGATCAAGATGCATGGAAATCTGCCAAATCGAGTGGGAAGAAGGGAGTTTCTTCAGCATTAGCCCCGTCGTGATGTAATGGTTGAAGTTACTATATGCAACTGAAATCATTATTCAATTCTGTAAGCTGCAGATTGGAGCCCTGAGATATGATGATGTCAGTTTTCTAGATTCAGCATCATTTTGCTTCTCGGTTTTCTATGTCATATGTCAAAATGCTAAACTCTCGAGCTCAGCCCATTAGCACTGGTTTAAGCATTCCATCTCTGAGTGTTGGACATACTGATGTAAATGGAATCCAAATGTCGTTCTCCCAGTACCCCATGGACTCAGAGAAGATGCCTCAGATGCAGCAACAGACAAATAATGTAGACTTTATGGACCTCGATTATAAGCCCCCTCTTTGCAATGTTTCCCAAGCAGATGGAGTAATGGCATTAACAGAAAGAGGTTCCTCCAACAATTTTCAGGGACCAACAGGATTGATGCGCTACCATTCGGCGCCCAGCTCATTTTTTTCAAGTTTAGGAGAAGAGGAAAATAATAACATTATATCAGAGTATTTCTCTGGTAATTCTTCGAATCCACTGCAATCAAATACCAAACCACTGCAGCAAAATCAATCTAGTATATTGAGTTTTCATCTCAGGGAAAATGAACCAGCAAAGCATCTTGGCGAACGCAATGAATATCTGAAAAGAAATGCACGCCAGCTCCCTTCCCTCAAAAGAAGTGCAGGGAATGTTTCTAGAGAAGATCTAGGCAAGCACCATCCTCTTGATGCAATCCTTGAGAATGTACCGGATGTATCCCAAGAGAGTTTTGGCACCTCTCAAATGTCATTGATGAGCCAAGTTCAAGTTTCTGAACCAAGTGGACAACACATCGATTCATCCTACCAAATGAATTCAGTTTGCTGCGATGCCCTTGATCAGTCAGGAGGAAGGATGGGCAATGCTTACTCCTCAACATCCAAGAATACACTTATTCGACATAGTAGCTCCCCAGCTGGGCTACTCTCTGAACTTGTTGCTGAAGGCCGAGGTACTTTTGAAAGTGGAATGCAAAATGGGGCTAACTTTACAGCAAGAAAGCGTGCAAAAGAATTGGATATGAAATTAATGCAAGGCTTGAATAACTCAGATCACCAGAAGGTAGAAGCAGGAATTCGAGGTGCATCTGCATTAACAAATCATCCATACAATTTGCCAAGATCCACATCTTCAGAACTTGCAATGGAAGAATTCCTGCAAGATGCTGTTCCATGCAAGGTCCGGGCAAAAAGAGGCTGTGCAACGCACCCACGGAGCATTGCTGAAAGGGTTCGAAGAACACGAATCAGTGAAAGAATGAGAAAACTGCAGGAACTTGTGCCGAACAGTGACAAGCAAACAGTAAATATTGCCGACATGTTAGATGAGGCTGTTGAATATGTCAAGTCTCTTCAGAAGCAGGTCCAGGAACTTACGGAAAATCGAGCCAAGTGTACCTGCACACATAATCCGGATTGTGCATACAAAACATAGTCTTATTGTGAATATACAATCCTAAGCACCTGATGTAAAAGATATTTAATACTGTTCTCAAATATATCTTCTTCTTGGCACAGGCCCTTTCCCTTGTGAGTGCTTAGGTATATATTCTGTCTTGATCTGACATTGGAGCCTAGTCAGAAATGTAATATGTGCATTATGTAATACTGTGGGGCAAATCCTATACAACCTCTTATTTTGGAAATACATTGTAGCATTAGCTTCATGCTTACGAAACGACAGTCATTATCAGTGCCTGGTAAGTGGGGTCTTTATCTTAATTGGTGCTTATTAAGAAAAAAA

Ace file of the UniGene sp_v3.0_unigene24739 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Helix-loop-helix protein 1A n=1 Tax=Pinus taeda RepID=Q9SQ79_PINTA	-	-	0.0	89%
FL-Next	sp=Transcription factor bHLH130; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	35%
Sma3	BHLH transcription factor	-	-	8.787e-13	-

Source	Gene names
Sma3	AT4G02590; At1g03040; At1g35460; At2g24260; At3g07340; At4g02590; At4g09180; At4g30980; At5g50915; At5g58010; B1065G12.3; BHLH137; BHLH59; BHLH62; BHLH66; BHLH69; BHLH7; BHLH80; BHLH81; BHLH82; EN71; EN72; EN85; EN89; EN92; EN93; EN94; EN95; EN96; F10O3.1

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	plastid	GO:0009536	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	transcription regulator activity	GO:0030528	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	protein modification process	GO:0006464	Biological Process	-
Sma3	multicellular organismal development	GO:0007275	Biological Process	-
Sma3	double fertilization forming a zygote and endosperm	GO:0009567	Biological Process	-
Sma3	response to gibberellin stimulus	GO:0009739	Biological Process	-
Sma3		GO:0045449	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Ubiquitin	IPR000626	-	-
Sma3		IPR001092	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Ureohydrolase	IPR006035	-	-
Sma3	DNA-directed RNA polymerase, subunit 2, domain 6	IPR007120	-	-
Sma3	Helix-loop-helix DNA-binding	IPR011598	-	-
Sma3	RNA polymerase Rpb2, OB-fold	IPR014724	-	-
Sma3	DNA-directed RNA polymerase, subunit 2	IPR015712	-	-
Sma3	Peptidase S26A, signal peptidase I, serine active site	IPR019756	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002314023.1	predicted protein [Populus trichocarpa]	6.00036e-42	54%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q66GR3

Fln msg: your sequence is longer than subject: 442 - 359

Fln protein: MSYVKMLNSRAQPISTGLSIPSLSVGHTDVNGIQMSFSQYPMDSEKMPQMQQQTNNVDFMDLDYKPPLCNVSQADGVMALTERGSSNNFQGPTGLMRYHSAPSSFFSSLGEEENNNIISEYFSGNSSNPLQSNTKPLQQNQSSILSFHLRENEPAKHLGERNEYLKRNARQLPSLKRSAGNVSREDLGKHHPLDAILENVPDVSQESFGTSQMSLMSQVQVSEPSGQHIDSSYQMNSVCCDALDQSGGRMGNAYSSTSKNTLIRHSSSPAGLLSELVAEGRGTFESGMQNGANFTARKRAKELDMKLMQGLNNSDHQKVEAGIRGASALTNHPYNLPRSTSSELAMEEFLQDAVPCKVRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNSDKQTVNIADMLDEAVEYVKSLQKQVQELTENRAKCTCTHNPDCAYKT*

Protein Length: 443

Fln nts: ATGGGGGCAGTTAAGAGCGGCCTGCAGTTCTCGTCATCACTGGGCACGGGAATCCAACGAAAGAGAAAAAGAAGAGAAAATGTCATCTGCGTTCTGTGCGAGGCGAAGCTGAAGTGCAGAGTGTTGGAATCGAGATTTTTATGAATGCCGAGGGTTTGATCCGTTTCGAAAATTCCAGCCAAGGCTGTTGTAGCGGAGACTCCGAGAGACTGAAGGAAAAGAAAAGGTTCAGGATGGTGTTAAACAAATGAAAGCAGTAAAGTTTAAACATTCAAAGCAAGGGGTCGTCATCTTGCAATCAATGCTGCAATTGGCAACAGTGTAGAACTTTGTAATGACAAAGATTGCAATGATCATGTATTTTGTTGGCTGTTTGGATGAAGGCGCTGCATGATTACATTGTGATCAAGATGCATGGAAATCTGCCAAATCGAGTGGGAAGAAGGGAGTTTCTTCAGCATTAGCCCCGTCGTGATGTAATGGTTGAAGTTACTATATGCAACTGAAATCATTATTCAATTCTGTAAGCTGCAGATTGGAGCCCTGAGATATGATGATGTCAGTTTTCTAGATTCAGCATCATTTTGCTTCTCGGTTTTCT_-_ATGTCATATGTCAAAATGCTAAACTCTCGAGCTCAGCCCATTAGCACTGGTTTAAGCATTCCATCTCTGAGTGTTGGACATACTGATGTAAATGGAATCCAAATGTCGTTCTCCCAGTACCCCATGGACTCAGAGAAGATGCCTCAGATGCAGCAACAGACAAATAATGTAGACTTTATGGACCTCGATTATAAGCCCCCTCTTTGCAATGTTTCCCAAGCAGATGGAGTAATGGCATTAACAGAAAGAGGTTCCTCCAACAATTTTCAGGGACCAACAGGATTGATGCGCTACCATTCGGCGCCCAGCTCATTTTTTTCAAGTTTAGGAGAAGAGGAAAATAATAACATTATATCAGAGTATTTCTCTGGTAATTCTTCGAATCCACTGCAATCAAATACCAAACCACTGCAGCAAAATCAATCTAGTATATTGAGTTTTCATCTCAGGGAAAATGAACCAGCAAAGCATCTTGGCGAACGCAATGAATATCTGAAAAGAAATGCACGCCAGCTCCCTTCCCTCAAAAGAAGTGCAGGGAATGTTTCTAGAGAAGATCTAGGCAAGCACCATCCTCTTGATGCAATCCTTGAGAATGTACCGGATGTATCCCAAGAGAGTTTTGGCACCTCTCAAATGTCATTGATGAGCCAAGTTCAAGTTTCTGAACCAAGTGGACAACACATCGATTCATCCTACCAAATGAATTCAGTTTGCTGCGATGCCCTTGATCAGTCAGGAGGAAGGATGGGCAATGCTTACTCCTCAACATCCAAGAATACACTTATTCGACATAGTAGCTCCCCAGCTGGGCTACTCTCTGAACTTGTTGCTGAAGGCCGAGGTACTTTTGAAAGTGGAATGCAAAATGGGGCTAACTTTACAGCAAGAAAGCGTGCAAAAGAATTGGATATGAAATTAATGCAAGGCTTGAATAACTCAGATCACCAGAAGGTAGAAGCAGGAATTCGAGGTGCATCTGCATTAACAAATCATCCATACAATTTGCCAAGATCCACATCTTCAGAACTTGCAATGGAAGAATTCCTGCAAGATGCTGTTCCATGCAAGGTCCGGGCAAAAAGAGGCTGTGCAACGCACCCACGGAGCATTGCTGAAAGGGTTCGAAGAACACGAATCAGTGAAAGAATGAGAAAACTGCAGGAACTTGTGCCGAACAGTGACAAGCAAACAGTAAATATTGCCGACATGTTAGATGAGGCTGTTGAATATGTCAAGTCTCTTCAGAAGCAGGTCCAGGAACTTACGGAAAATCGAGCCAAGTGTACCTGCACACATAATCCGGATTGTGCATACAAAACATAG___TCTTATTGTGAATATACAATCCTAAGCACCTGATGTAAAAGATATTTAATACTGTTCTCAAATATATCTTCTTCTTGGCACAGGCCCTTTCCCTTGTGAGTGCTTAGGTATATATTCTGTCTTGATCTGACATTGGAGCCTAGTCAGAAATGTAATATGTGCATTATGTAATACTGTGGGGCAAATCCTATACAACCTCTTATTTTGGAAATACATTGTAGCATTAGCTTCATGCTTACGAAACGACAGTCATTATCAGTGCCTGGTAAGTGGGGTCTTTATCTTAATTGGTGCTTATTAAGAAAAAAA

Fln Alignment:

Contig24739___SSNNFQGP----TGLMRYHSAPSSFFSSLGEEE-----NNNIISEYFSGNSSN-----PLQSNTKPLQQNQSSILSFHLR-----ENEPAKHLGERNEYLKRNARQLPSLKRSAGNVSREDLGKHH--PLDAILENVPDVSQESFGTXXXXXXXXXXXSEPSGQHIDSSYQMNSVCCDALDQSG-GRMGNAY-------SSTSKNTLIRHSS------SPAGLLSELVAEGRGT-FESGMQNGA-----NFTARKRAKELDMKLMQGLNNSDHQKVEAGIRGASALTNHPYNLPRSTSSELAMEEF-----LQDAVPCKVRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNSDKQTVNIADMLDEAVEYVKSLQKQVQELTENRAKCTC
Q66GR3_______________SNNHLYDPNPTGSGLLRFRSAPSSVLAAFVDDDKIGFDSDRLLSRFVTSNGVNGDLGSPKFEDKSPVSLTNTSV-SYAATLPPPPQLEPSSFLGLPPHY----PRQSKGIMNSVGLDQFLGINNHHTKPVESNL-----LRQSS---------------SPAGMFTNLS-----------DQNGYGSMRNLMNYEEDEESPSNSNGLRRHCSLSSRPPSSLGMLSQIPEIAPETNFPYSHWNDPSSFIDNLSSLKREAEDDGKLFLGAQNG-----ESGNR--MQLLSHHLSLPKSSSTASDMVSVDKYLQLQDSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQT-NTSDMLDLAVDYIKDLQRQYKILNDNRANCKC

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
706	25		75		0.996473
877	57			42	1.0
955	46			53	1.0
1018		57	42		1.0
1248	50		50		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain