SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene24711

Length: 930 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene24711 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PAP_fibrillin domain containing protein	-	-	8.0e-31	30%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	98%

Source	Gene names
Sma3	At4g00030; CHLREDRAFT_205926; F6N15.13; GSVIVT00019153001; OSJNBa0010H02.5; Os04g0551700; OsI_16907; OsJ_15704; PAP11; PHYPADRAFT_154038; PLAP3; POPTRDRAFT_286302; RCOM_1609650;

Source	GOs	Term	Type	e value	Identity
Sma3	chloroplast	GO:0009507	Cellular Component	0.0	-
Sma3	structural molecule activity	GO:0005198	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Plastid lipid-associated protein/fibrillin conserved domain	IPR006843	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G00030.1	Plastid-lipid associated protein PAP / fibrillin family protein chr4:13565-14366 FORWARD LENGTH=212	58%
RefSeq	Arabidopsis thaliana	NP_191914.1	putative plastid-lipid-associated protein 11 [Arabidopsis thaliana]	58%
RefSeq	Populus trichocarpa	XP_002326822.1	predicted protein, partial [Populus trichocarpa]	69%

Full-Lengther Next Prediction

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
46	66		33		0.997452
188	14		85		0.993533
227	12		87		0.992554
230		87	12		0.992554
231	87			12	0.992554
345		20		80	0.995493
685	18		81		0.999994
827		26	73		1.0
845			26	73	1.0
862		57		42	1.0

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain