SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene24427

Length: 630 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene24427 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ribosomal protein S7 n=1 Tax=Cycas taitungensis RepID=B0BLH1_CYCTA	-	-	0.0	76%
FL-Next	sp=30S ribosomal protein S7, chloroplastic; Pinus amamiana. Plastid; Chloroplast.	-	-	0.0	32%
Sma3	Ribosomal protein S7	-	-	3.087e-31	-

Source	Gene names
Sma3	AtMg01270; RCOM_2120230; RPS7; rps7; rps7-1;

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	small ribosomal subunit	GO:0015935	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	rRNA binding	GO:0019843	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein S7	IPR000235	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	Ribosomal protein S7, bacterial-type	IPR005717	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	ATMG01270.1	RPS7 mitochondrial ribosomal protein S7 chrM:314627-315073 FORWARD LENGTH=148	0.0	78%
RefSeq	Arabidopsis thaliana	NP_178787.1	ribosomal protein S7 [Arabidopsis thaliana]	0.0	78%

Full-Lengther Next Prediction

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
583	25	75			0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain