SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene24345

Length: 3499 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene24345
ATGCAAGAGCCCTTTTCTCAGGCAATAGATCTGCGCCCCTCAACACCCTTATTGCAGTTAATTTTTGTTGTTTTCTTTGGTTTGTGTACTGAGAAATATGCCTGGATTGGTATCAACAGATGCAATGGAGGAAGAGCAGCAGCACCAGCAGCAGCCAAGAAGTCCGGGGAAAAACATCAAATCTGAGTCTGAGAACACCAAATCCCCCAGAAGCCCGCTGAGTCCCAAGAGTCCGACAGGCATGAGCAAGTCTCCCAACAGTCCTCAACAGCAGAATTTAGTTGATAACAATGGCAATCATGAGAATGGTGCTGGGAATGCGAATACTAGTATAGAAGAGCTCTATGAGAATATCTGTCAGATGAAGAGCTCAGGGGATCAATCCCCATCAAGGCCCAGTTCAACTGAGCAATCAGAGGTTGAGGATTTCAGGATTGAGTCGGAGCTGCAGCAGCTGGTTGGTGGAGAAAATCCATCGAAACCATCTTCTTCGAAGCCTGTCAAGGAGGAGGAGGAGAAGCCCGTCAAGGAAGGGGAGAAATCCATCAAGGATGGGAGAACTCCACGGAAGGACAATAAAATCGTCAGCAATGGAGCTGCCAGGTCTGCAGGTAAGGAAATCTCTTCTGAAAGCAAGAAAGTGAGTAGTTTGGATAAGAATAAGATTGTTCAGGACAGACCCAGTAGACCCGTTTCCTCAATCCAATCTAGAAAGCCAACCAAATTAGTAATAAGTTCAGATGTGCCCACCAAGGCCAGTCCTAGTCCTAGTAAGGTCAGCGGCAGAAATACCCCTAACACCCCTGCAAAGACCTCCTCAAAGCAGCAGCAGCAGCAATCCAAGAGCTCCTCGGACCAGAATTCTGAGAGAAATCCCAATCACAGGGAAGAGAATTCACCTGTGGTGACCCAAAAGAAACTCTTCGTAAGCCCTGACAAGCCCCCAAGGAAGTTGAGTCCGAGCCCGATGGCTAAAAGGAGGTTATCATCCCCTTCTGGTCTGAGTAAAGTCCAGAGTGAGGCCGATGAGATGTCAGAAGCAGGCCTAGATAACCCAGATCTTGGTCCATTCTTGCTCAAGCTTGCAAGGAACATGATAGCCTCTGGGGATAATCCTTACAAGGCCCTGGAATGCGCTGTGAGAGCGTCGAAATCATTCGAGAAGTGCGCGGATGGGAAGCCCAGCTTGGAATTGGTGATGAGTTTGCATATTCTGGCTGCAATTCACTGCAGTTTGGGTCAATATGAGCAGGCAATTCCTGTTCTGGAGAGGTCTATCGAAGTTCCTGTGTTGGAGGAAGGGCCGGAGCATGCTCTTGCTACATTTGCAGGGCGCATGCAGCTGGGTGATACGTATGCCATGTTGGGTCAGCTTGAGAATTCCATAGAGTGCTATAAATCTGGTTTGGAAATTCAGAAACAAGTCCTGGGAGAAATGGATCCGAGAGTCGGAGAGACTTGTCGGTATCTGGCTGAAGCCCATGTTCAAGCGATGCAATTTGATGAGGCTGAGAAGCTCTGCCAACATGCTCTGGATATACACAAAGAACACAGCATCCCAGCTTCCCTTGAAGAAGCAGCTGATAGAAGGCTAATGGCATTGATTTGTGATGGAAAAGGAGACTATGAAGCGGCCCTGGAGCATTTGGTCTTAGCCAGTATGGCTATGATCTCGAATGGTCAAGAGTCAGAGGTGGCATCAATAGATTGCAGTATTGGTGACACATATCTCTCTTTGGGCAGATATGATGAAGCTGTTTTTGCTTATCAGAAATCCCTTACTGTGCTGAAATCCACGAAAGGTGAGAACCATCCCTCTGCTGCTGCAGTTTTTGTCCGTCTGGCAGACCTGTACTACAAAACAGGGAAACTAAGGGAATCTAAAACTTACTGCGAGAATGCTCTCAGAATTTATAATAAGCCTGCCGCAGGGCATCCTCCTGAAGATATAGCTGGTGGATTGACAGAATTGTCTGCAATTTATGAAGCAATGAGTGAACCTGAACAAGCCCTTCGCCTTCTCCAAAAGGCTCTCAAGATTTTGGATGATGCTCCTGGTCAGCAGAGTGCAATAGCAGGCATTGAAGCACAGATGGGAGTGATTTATTATATTCTAGGAAAGTATGGTGAGTCGTATTCTTCATTCAAGAGTGCAGTGGGAAAGCTGAGGGCAAGTGGAGAGAGGAAATCTTCCTTCTTTGGAGTCGTCTTGAATCAAATGGGACTGGCATGTGTCCAACGTTATGCCATTAATGAGGCCGCAGATTTATTTGAAGAAGCCAAGAGTATTTTGGAAGAAGTTTGTGGTCCTTATCATCCAGATACTCTTGCAGTATATAGCAATCTGGCCGGAACATATGATGCAATGGGCAGGTTGGAGGATGCCATTGGGGTTTTGGAATATGTTGTTGGAATGAGAGAAGAGAAACTTGGCACAGCAAACCCAGATGTAGATGATGAAAAGAAAAGGCTGGAAGAACTCTTGAAGGAAGCTGGCAGAGCACGAAACAGGAAGGCCAAATCACTAGAAACTCTACTTCAATCAAATTCTATGAAGAAGAAAAAGGAGAAATCAAAGTGATTAGAATGTGAATGTTGATAATTTCTCATAAGATTATGGACCTAATTGGTGCTTGTTTAGAGCGGAACAGGTCAGTCTGCATAGGACAGGTCAATCTGCAATTATAAATCAAAATTCTTTCAACACAAGAAGAGTATGTTAGCAACATTAACTCTGTTAGATGTCTACTTGAGCTATATTGTCTACGTCTCAAAGGACTACGTCAAAGTGGAGTGCTGCAGGATACCAAGGAATCTTCTAAACAATGTTTGGACATGAATGGTGCTGATTTCCAAGCTTTCTGCATTGTAGTTGGGTGGGTCAATGGTCCCTGTTCAGAGTTAGCATTTGATCACATGTTGCTAATCTTTGTTCTGTAAAATATGTAAAGGTCAGGAGATACAGATGGTTTCTTTGAGTTGCTTGTGAAGTTGTTTGCTTTTCATCTTTCTGCCAGCAGTGGGTAACTTTTGAAGGGTATGAAGCACGAAACGTTTCGGGGCATGTTCTTGTTTTGCCCCCATCCTCTGTGAATTCAGTTGAAGTTCTTTAGGCTTAGATAAAATAATAATCTGGCACAGATTGATCTGTGCTTGTTCCATGTCCTGGAGTCTCTGCATTCTTATCTAAGAGCCCTTAGCTCATTTGCATCACTGGAATTCACAAAGTCTAGGCCCAAGTTAATAGTTATTGTTATTCCAACGAGCATGTGTGAAATTAAAAGCAACGACACATCACTGCCAATAATCTTCATCATAAAGTGACCTTATTTCGTTTCAGTTTCGTTGCCTTGGACAATCATTCAGATGGTAACAAGATTCATTTATCTTATGTTGTAATTGTTGGTATAGATTCATAAAACCTGTATCAGATACAGGGGATATTGTATTCGTGAGATTTTAATATTTATTTAATTGTTGTCTCGTGGTTTATTGCCCT

Ace file of the UniGene sp_v3.0_unigene24345 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Kinesin light chain, putative n=1 Tax=Ricinus communis RepID=B9RB32_RICCO	-	-	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Sma3	Putative uncharacterized protein	-	-	-

Source	InterPros	Term	Type	Identity
Sma3	Tetratricopeptide TPR-1	IPR001440	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Tetratricopeptide repeat-containing domain	IPR013026	-	-
Sma3	Tetratricopeptide repeat	IPR019734	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G10840.1	Tetratricopeptide repeat (TPR)-like superfamily protein chr4:6656614-6659033 FORWARD LENGTH=609	64%
RefSeq	Arabidopsis thaliana	NP_192822.1	tetratricopeptide repeat domain-containing protein [Arabidopsis thaliana]	64%
RefSeq	Populus trichocarpa	XP_002321593.1	predicted protein, partial [Populus trichocarpa]	75%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LKE5

Fln msg:

Fln protein: MPGLVSTDAMEEEQQHQQQPRSPGKNIKSESENTKSPRSPLSPKSPTGMSKSPNSPQQQNLVDNNGNHENGAGNANTSIEELYENICQMKSSGDQSPSRPSSTEQSEVEDFRIESELQQLVGGENPSKPSSSKPVKEEEEKPVKEGEKSIKDGRTPRKDNKIVSNGAARSAGKEISSESKKVSSLDKNKIVQDRPSRPVSSIQSRKPTKLVISSDVPTKASPSPSKVSGRNTPNTPAKTSSKQQQQQSKSSSDQNSERNPNHREENSPVVTQKKLFVSPDKPPRKLSPSPMAKRRLSSPSGLSKVQSEADEMSEAGLDNPDLGPFLLKLARNMIASGDNPYKALECAVRASKSFEKCADGKPSLELVMSLHILAAIHCSLGQYEQAIPVLERSIEVPVLEEGPEHALATFAGRMQLGDTYAMLGQLENSIECYKSGLEIQKQVLGEMDPRVGETCRYLAEAHVQAMQFDEAEKLCQHALDIHKEHSIPASLEEAADRRLMALICDGKGDYEAALEHLVLASMAMISNGQESEVASIDCSIGDTYLSLGRYDEAVFAYQKSLTVLKSTKGENHPSAAAVFVRLADLYYKTGKLRESKTYCENALRIYNKPAAGHPPEDIAGGLTELSAIYEAMSEPEQALRLLQKALKILDDAPGQQSAIAGIEAQMGVIYYILGKYGESYSSFKSAVGKLRASGERKSSFFGVVLNQMGLACVQRYAINEAADLFEEAKSILEEVCGPYHPDTLAVYSNLAGTYDAMGRLEDAIGVLEYVVGMREEKLGTANPDVDDEKKRLEELLKEAGRARNRKAKSLETLLQSNSMKKKKEKSK*

Protein Length: 829

Fln nts: ATGCAAGAGCCCTTTTCTCAGGCAATAGATCTGCGCCCCTCAACACCCTTATTGCAGTTAATTTTTGTTGTTTTCTTTGGTTTGTGTACTGAGAAAT_-_ATGCCTGGATTGGTATCAACAGATGCAATGGAGGAAGAGCAGCAGCACCAGCAGCAGCCAAGAAGTCCGGGGAAAAACATCAAATCTGAGTCTGAGAACACCAAATCCCCCAGAAGCCCGCTGAGTCCCAAGAGTCCGACAGGCATGAGCAAGTCTCCCAACAGTCCTCAACAGCAGAATTTAGTTGATAACAATGGCAATCATGAGAATGGTGCTGGGAATGCGAATACTAGTATAGAAGAGCTCTATGAGAATATCTGTCAGATGAAGAGCTCAGGGGATCAATCCCCATCAAGGCCCAGTTCAACTGAGCAATCAGAGGTTGAGGATTTCAGGATTGAGTCGGAGCTGCAGCAGCTGGTTGGTGGAGAAAATCCATCGAAACCATCTTCTTCGAAGCCTGTCAAGGAGGAGGAGGAGAAGCCCGTCAAGGAAGGGGAGAAATCCATCAAGGATGGGAGAACTCCACGGAAGGACAATAAAATCGTCAGCAATGGAGCTGCCAGGTCTGCAGGTAAGGAAATCTCTTCTGAAAGCAAGAAAGTGAGTAGTTTGGATAAGAATAAGATTGTTCAGGACAGACCCAGTAGACCCGTTTCCTCAATCCAATCTAGAAAGCCAACCAAATTAGTAATAAGTTCAGATGTGCCCACCAAGGCCAGTCCTAGTCCTAGTAAGGTCAGCGGCAGAAATACCCCTAACACCCCTGCAAAGACCTCCTCAAAGCAGCAGCAGCAGCAATCCAAGAGCTCCTCGGACCAGAATTCTGAGAGAAATCCCAATCACAGGGAAGAGAATTCACCTGTGGTGACCCAAAAGAAACTCTTCGTAAGCCCTGACAAGCCCCCAAGGAAGTTGAGTCCGAGCCCGATGGCTAAAAGGAGGTTATCATCCCCTTCTGGTCTGAGTAAAGTCCAGAGTGAGGCCGATGAGATGTCAGAAGCAGGCCTAGATAACCCAGATCTTGGTCCATTCTTGCTCAAGCTTGCAAGGAACATGATAGCCTCTGGGGATAATCCTTACAAGGCCCTGGAATGCGCTGTGAGAGCGTCGAAATCATTCGAGAAGTGCGCGGATGGGAAGCCCAGCTTGGAATTGGTGATGAGTTTGCATATTCTGGCTGCAATTCACTGCAGTTTGGGTCAATATGAGCAGGCAATTCCTGTTCTGGAGAGGTCTATCGAAGTTCCTGTGTTGGAGGAAGGGCCGGAGCATGCTCTTGCTACATTTGCAGGGCGCATGCAGCTGGGTGATACGTATGCCATGTTGGGTCAGCTTGAGAATTCCATAGAGTGCTATAAATCTGGTTTGGAAATTCAGAAACAAGTCCTGGGAGAAATGGATCCGAGAGTCGGAGAGACTTGTCGGTATCTGGCTGAAGCCCATGTTCAAGCGATGCAATTTGATGAGGCTGAGAAGCTCTGCCAACATGCTCTGGATATACACAAAGAACACAGCATCCCAGCTTCCCTTGAAGAAGCAGCTGATAGAAGGCTAATGGCATTGATTTGTGATGGAAAAGGAGACTATGAAGCGGCCCTGGAGCATTTGGTCTTAGCCAGTATGGCTATGATCTCGAATGGTCAAGAGTCAGAGGTGGCATCAATAGATTGCAGTATTGGTGACACATATCTCTCTTTGGGCAGATATGATGAAGCTGTTTTTGCTTATCAGAAATCCCTTACTGTGCTGAAATCCACGAAAGGTGAGAACCATCCCTCTGCTGCTGCAGTTTTTGTCCGTCTGGCAGACCTGTACTACAAAACAGGGAAACTAAGGGAATCTAAAACTTACTGCGAGAATGCTCTCAGAATTTATAATAAGCCTGCCGCAGGGCATCCTCCTGAAGATATAGCTGGTGGATTGACAGAATTGTCTGCAATTTATGAAGCAATGAGTGAACCTGAACAAGCCCTTCGCCTTCTCCAAAAGGCTCTCAAGATTTTGGATGATGCTCCTGGTCAGCAGAGTGCAATAGCAGGCATTGAAGCACAGATGGGAGTGATTTATTATATTCTAGGAAAGTATGGTGAGTCGTATTCTTCATTCAAGAGTGCAGTGGGAAAGCTGAGGGCAAGTGGAGAGAGGAAATCTTCCTTCTTTGGAGTCGTCTTGAATCAAATGGGACTGGCATGTGTCCAACGTTATGCCATTAATGAGGCCGCAGATTTATTTGAAGAAGCCAAGAGTATTTTGGAAGAAGTTTGTGGTCCTTATCATCCAGATACTCTTGCAGTATATAGCAATCTGGCCGGAACATATGATGCAATGGGCAGGTTGGAGGATGCCATTGGGGTTTTGGAATATGTTGTTGGAATGAGAGAAGAGAAACTTGGCACAGCAAACCCAGATGTAGATGATGAAAAGAAAAGGCTGGAAGAACTCTTGAAGGAAGCTGGCAGAGCACGAAACAGGAAGGCCAAATCACTAGAAACTCTACTTCAATCAAATTCTATGAAGAAGAAAAAGGAGAAATCAAAGTGA___TTAGAATGTGAATGTTGATAATTTCTCATAAGATTATGGACCTAATTGGTGCTTGTTTAGAGCGGAACAGGTCAGTCTGCATAGGACAGGTCAATCTGCAATTATAAATCAAAATTCTTTCAACACAAGAAGAGTATGTTAGCAACATTAACTCTGTTAGATGTCTACTTGAGCTATATTGTCTACGTCTCAAAGGACTACGTCAAAGTGGAGTGCTGCAGGATACCAAGGAATCTTCTAAACAATGTTTGGACATGAATGGTGCTGATTTCCAAGCTTTCTGCATTGTAGTTGGGTGGGTCAATGGTCCCTGTTCAGAGTTAGCATTTGATCACATGTTGCTAATCTTTGTTCTGTAAAATATGTAAAGGTCAGGAGATACAGATGGTTTCTTTGAGTTGCTTGTGAAGTTGTTTGCTTTTCATCTTTCTGCCAGCAGTGGGTAACTTTTGAAGGGTATGAAGCACGAAACGTTTCGGGGCATGTTCTTGTTTTGCCCCCATCCTCTGTGAATTCAGTTGAAGTTCTTTAGGCTTAGATAAAATAATAATCTGGCACAGATTGATCTGTGCTTGTTCCATGTCCTGGAGTCTCTGCATTCTTATCTAAGAGCCCTTAGCTCATTTGCATCACTGGAATTCACAAAGTCTAGGCCCAAGTTAATAGTTATTGTTATTCCAACGAGCATGTGTGAAATTAAAAGCAACGACACATCACTGCCAATAATCTTCATCATAAAGTGACCTTATTTCGTTTCAGTTTCGTTGCCTTGGACAATCATTCAGATGGTAACAAGATTCATTTATCTTATGTTGTAATTGTTGGTATAGATTCATAAAACCTGTATCAGATACAGGGGATATTGTATTCGTGAGATTTTAATATTTATTTAATTGTTGTCTCGTGGTTTATTGCCCT

Fln Alignment:

Contig24345___MPGLVSTDAMEEEQQHQQQPRSPGKNIKSESENTXXXXXXXXXXXPTGMSKSPNSPQQQNLVDXXXXXXXXXXXXNTSIEELYENICQMKXXXXXXXXXXXSTEQSEVEDFRIESELQQLVGGENXXXXXXXXXXXXXXXXXXXXXXXSIKDGRTPRKDNKIVSNGAARSAGXXXXXXXXXXXSLDKNKIVQDRPSRPVSSIQSRKPTKLVISSDVPTKASPSPSKVSGRNTPNTPAKTXXXXXXXXXXXXXXQNSERNPNHREENSPVVTQKKLFVSPDKPPRKLSPSPMAKRRLSSPSGLSKVQSEADEMSEAGLDNPDLGPFLLKLARNMIASGDNPYKALECAVRASKSFEKCADGKPSLELVMSLHILAAIHCSLGQYEQAIPVLERSIEVPVLEEGPEHALATFAGRMQLGDTYAMLGQLENSIECYKSGLEIQKQVLGEMDPRVGETCRYLAEAHVQAMQFDEAEKLCQHALDIHKEHSIPASLEEAADRRLMALICDGKGDYEAALEHLVLASMAMISNGQESEVASIDCSIGDTYLSLGRYDEAVFAYQKSLTVLKSTKGENHPSAAAVFVRLADLYYKTGKLRESKTYCENALRIYNKPAAGHPPEDIAGGLTELSAIYEAMSEPEQALRLLQKALKILDDAPGQQSAIAGIEAQMGVIYYILGKYGESYSSFKSAVGKLRASGERKSSFFGVVLNQMGLACVQRYAINEAADLFEEAKSILEEVCGPYHPDTLAVYSNLAGTYDAMGRLEDAIGVLEYVVGMREEKLGTANPDVDDXXXXXXXXXXEAGRARNRKAKSLETLLQSNSM
B8LKE5_______________MPGLVSADAMEEEQQQQ---RSPVKNIKSESENNKSPRSPLSPKSPTSMSKSPNSPHQQNSVDNNSNRENGAGNANTSIEELYENVCQMKSSGDQSPSRPSSTEQSEVEDFRIESELQQLVGGENPSKPSSSSKPVKEEEKPIKEGEKPIKDGRTPRKDNKIVSNGAARSGGKEISSESKKASSLDKNKIVQDRPTRSVSSIQSRKPIKLVISSDVPTKASPSPSKVSGRNTPNTPAKTSSKQQQQQSKSSSDQNSERNPNPRDENSPAVTQKKLFVSPDKPPRKLSPSPMARRRLSSPSGLSKAQSEADEMSELGLDNPDLGPFLLKLARNMIASGDNPYKALECAVRASKSFEKCADGKPSLELVMSLHILAAIHCSLGQYEQAIPVLERSIEVPVLEEGSEHALATFAGRMQLGDTYAMLGQLENSIECYKSGLEIQKQVLGEMDPRVGETCRYLAEAHVQAMQFDEAEKLCKHALDIHKEHSTPASLEEAADRRLMALICDGKGDYEAALEHLVLASMAMISNGQESEVASIDCSIGDTYLSLGRYDEAVFAYQKSHTVLKSTKGENHPSAAAVFVRLADLYYKTGKLRESKTYCENALRIYNKPSAGHPPEDIAGGLTELSAIYEAMSEPEQALRLLQKALKILDDAPGQQSAIAGIEAQMGVIYYILGKYGESYSSFKSAVAKLRASGERKSSFFGVVLNQMGLACVQRYAINEAADLFEEARSILEEVSGQYHPDTLAVYSNLAGTYDAMGRLEDAIGVLEYVVGMREEKLGTANPDVDDEKKRLAELLKEAGRARNRKAKSLETLLQSNSI

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
1273		42	57		1.0
2317		12	87		0.992554
2402	83		16		0.994512
2797		25	75		0.996473
2840		25		75	0.996473
2841		25		75	0.996473
2843	25			75	0.996473
3299	10			90	0.90298
3316	90			10	0.90298
3347			12	87	0.992554
3355		50	50		1.0
3458		33		66	0.997452

SSRs (tot: 2)

Start position	End position	Sequence	Length
2663	2678	TGC TGC TGC TGC TGC T	16
2983	2996	CTC CTC CTC CTC CT	14

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain