SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene24243

Length: 2809 nt

UniGene Fasta

>sp_v3.0_unigene24243
AGGTAAAAGTCTCTCCGACAGACCCAATAATGGCCGTGCAGCGCCGCCCCAACTTAGGAAAAGAGTTATGGCTTATATTTTAACTTGAATTGCAAAATGACAACATCCTGAGATTAGGTTTTAGGAACTCTGATAGAGAAAATGCAAGGGCCTGTTTTTCCATCTAAAAGGACAATCGACATCGACAGTTAATATTTTGAATTCAAACAATCTGCGTTATAGCGTCCTCAGCCCCCCGATACAAGGCAATCGACAAAAGGTGGGATGATTTTTTGACTTCCATCTCCATTCTCAAACCTCCAGGGTTTTAGCAGTAGCAACAGGAGAAATAGTGTCCCCAATACAAAGCATTTGAAAATGGCCTCTGAGCGTTCCGAACCCTCTAAAAAGAGAAAGAGCAATCTCGGCGATAAGGAAGGCTCTAAGCCAGGTAAAAAATTCCCCTCTAAGAAGAGAAAGAGCGATTCCGGCGACAAGGGAGGGCCGAAGCCAGGTAAAGAATTCCCAAAGAACCGGAAGGAGATCAAAGCCAAGCGTCATTCAAAGACAGAAGATGATGGTAAGTCTGTTGTTGATAGCAGTAAGCCCTTCAAGCGACAGTTTAACAATAAGCCCGTTGATGACAAAAAGCTGAAAGACGCTAAACTGGATCACCGAAATTGGAAGGAGCTAACCGAGAATCGCAAAAGGAAGAGAAAACCTTATTATGACCTTCAGAAGGAACTCGTGGCATCATGGGAGAAGATGAGGCAAAGGAATATAAAAATTGAAGAAAGATCCAAGTTGATTTCAGAGACAATGAACAAAATGAAAGGAAAAATTCCAGATATTACGGGTTCCCACATTTCTTCACGCGTCTTACAGACGTGCATCAAGTATTGTCAGCCAGCAGAGAGGGACAGTGTTTATCAGGAGCTGCGTCCACATTTTTTAAAATTGGCACGAAATACTTATGCTGTACATCTTGTGACAAAGATGTTAGATCATGCAAACAAGGAACAATTGCAAGAAATTATATCTTCTCTTCATGGGCATGTTGTTGCTTTTCTCCGGCATCCAGTTGGATCAGCTGTTGTAGAACATGTCTTCAAACTTGCAAATGGAACTCAAAAGCAAGAACTTCTCTCAGAAATATATTCTGCAGAATTTCGGATATTCAAGGGTATCATCCCAAAGGGCAAGGGCAGATTAGTGGATTTGTTATCTGGTGAGCATCCATCAAAAAGGTCTGCAGTTTTGGAGCACATGACATTAGCATTACAGCCAATTCTTGAAAAAGGAATTGTTGACCACTCAATTGTGCATAGAGCTTTGTTGGAGTACATGTGTATATCAAACAAGTCATCTGTGTCAGATATAATTCAGCAGCTATCTGGGCCACTTCTTGTACGAATGATCCATACAAGAGATGGTTCAAAGGTTGGCGCATTTTGTATTATACATGGTGGTGCTAAGGAAAGAAAGAAGATTGTGAAAGGAATGAAAGGGCATGTAGTAAAGATTGCTCACGATGAATATGGATGTGTGATCCTCATGTGCATTCTCAGTTTTGTTGATGACACCAGTCTTGTTTCTAAGTTTATATTTCGTGAGCTAGAAAAAGATTTGAAAGAATTGGCATTAGCCAAGTATGGGCGGCGTCCACTTTTGCATCTTCTTTGCCCAAATGTACCTCGCTACTTTCCTGCAGATGTTCTGGAGACTCTAAGATCAACGATTCATTCTCTTACTACCTGTACCCAGGATGGGCCTCCCCAGTCTGCAGATGATGAACCTTCTGAAAGTCAAAAGCCATCTTCAGAGACAGATATCCCAGGTCTCAAAATTGATGAAAAAGATGAAGAGAATCTCGAAGAGAGTGAAGGGTTTGGGAAAATATCCAAAAAGGATTTTTCAACTAGAAGAATTGAACTTTTAACTAAGAGTGGATTCGCACAGAAACTTACAGAAATGTGTATGCAAAATGTAGGAGAACTTCTTCGTTCTCAGTATGGGAAGGACATTATTTTCGAGGTAGCAAATGGTGGGGCTGGAGATATTATGTGGCAGGTAGCAGCTGACAGTTTGACCGCTCTTCATAGAGCCATAGCAGATGTGGGTGCGTTGCCTCAACTAAATAATGAAGAAGGCTCTCAAAGTGATGAACATATATTTGTGCAATACCATTCCAGCAGGACAGTACGCAAGTTGATATTGGAGTCTCATGTACCTGATGGTGTCAATGCTCCCTCATTTGCCTCTATTTTGTGGGATGTGGCCTTAAAGGGCAAGTGCAAGATGTGGGCTCAAGGACACAGTGAGAAAGTTGTTTCTGCATTCCTCGATTGTTCAGACTTGGAAGTGAAAAACATGGCAAGTTCTGAGCTACAGCCACTTATTGATGCGGGGTTGTTGAAGATTGCGAGTGCTAAACATGTTTAGGATGCTTTACAGAAATTTTGATATTGCTTTGACAAGCATGTGCATTGTATAGAAGTAAACTAAGATTCATCATTTATATGTTCTTACATGGTTTGCTCGATGCTCTCGAGAGTAAACTTCATTATAAGAAAATTTTGACATTTGATATTTATAAAATTCATATTTGGAAGAGAACATGCATGTATTCTGTAGGCTGGGATGTTTTAGACTCTAGCGAAATGATAAGGTTCATCATATTCAGTGTTAGAACACACCCTTCCTATATTTAAATGGATGAGATAACGTCTGTAATAAAAGGGCATTCCCCAAGCAAATCTGTGCATAATGGCTTACAGGGTTGATTACGGAAAGCTGATGTATCTAAGATAACATTCTCTTGTATGAAATC

Ace file of the UniGene sp_v3.0_unigene24243

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pfam10243, MIP-T3, Microtubule-binding protein MIP-T3	-	-	0.0001	18%
FL-Next	sp=Pumilio homolog 24; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	48%

Source	Gene names
Sma3	At3g16810; GSVIVT00033058001; LOC_Os03g61560; OSJNBa0078D06.17; OSJNBb0027B08.11; Os03g0831100; OsI_14178; OsJ_13226; PHYPADRAFT_147581; POPTRDRAFT_1112991; POPTRDRAFT_565506; RCOM_0682660; VITISV_016047;

Source	GOs	Term	Type	e value	Identity
Sma3	nucleolus	GO:0005730	Cellular Component	0.0	-
Sma3	RNA binding	GO:0003723	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Pumilio RNA-binding repeat	IPR001313	-	0.0	-
Sma3	Armadillo-like helical	IPR011989	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G16810.1	APUM24, PUM24 pumilio 24 chr3:5723436-5727539 REVERSE LENGTH=641	48%
RefSeq	Arabidopsis thaliana	NP_566559.1	protein pumilio 24 [Arabidopsis thaliana]	48%
RefSeq	Populus trichocarpa	XP_002328590.1	predicted protein [Populus trichocarpa]	51%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q9LRZ3

Fln msg: your sequence is longer than subject: 688 - 641

Fln protein: MASERSEPSKKRKSNLGDKEGSKPGKKFPSKKRKSDSGDKGGPKPGKEFPKNRKEIKAKRHSKTEDDGKSVVDSSKPFKRQFNNKPVDDKKLKDAKLDHRNWKELTENRKRKRKPYYDLQKELVASWEKMRQRNIKIEERSKLISETMNKMKGKIPDITGSHISSRVLQTCIKYCQPAERDSVYQELRPHFLKLARNTYAVHLVTKMLDHANKEQLQEIISSLHGHVVAFLRHPVGSAVVEHVFKLANGTQKQELLSEIYSAEFRIFKGIIPKGKGRLVDLLSGEHPSKRSAVLEHMTLALQPILEKGIVDHSIVHRALLEYMCISNKSSVSDIIQQLSGPLLVRMIHTRDGSKVGAFCIIHGGAKERKKIVKGMKGHVVKIAHDEYGCVILMCILSFVDDTSLVSKFIFRELEKDLKELALAKYGRRPLLHLLCPNVPRYFPADVLETLRSTIHSLTTCTQDGPPQSADDEPSESQKPSSETDIPGLKIDEKDEENLEESEGFGKISKKDFSTRRIELLTKSGFAQKLTEMCMQNVGELLRSQYGKDIIFEVANGGAGDIMWQVAADSLTALHRAIADVGALPQLNNEEGSQSDEHIFVQYHSSRTVRKLILESHVPDGVNAPSFASILWDVALKGKCKMWAQGHSEKVVSAFLDCSDLEVKNMASSELQPLIDAGLLKIASAKHV*

Protein Length: 689

Fln nts: AGGTAAAAGTCTCTCCGACAGACCCAATAATGGCCGTGCAGCGCCGCCCCAACTTAGGAAAAGAGTTATGGCTTATATTTTAACTTGAATTGCAAAATGACAACATCCTGAGATTAGGTTTTAGGAACTCTGATAGAGAAAATGCAAGGGCCTGTTTTTCCATCTAAAAGGACAATCGACATCGACAGTTAATATTTTGAATTCAAACAATCTGCGTTATAGCGTCCTCAGCCCCCCGATACAAGGCAATCGACAAAAGGTGGGATGATTTTTTGACTTCCATCTCCATTCTCAAACCTCCAGGGTTTTAGCAGTAGCAACAGGAGAAATAGTGTCCCCAATACAAAGCATTTGAAA_-_ATGGCCTCTGAGCGTTCCGAACCCTCTAAAAAGAGAAAGAGCAATCTCGGCGATAAGGAAGGCTCTAAGCCAGGTAAAAAATTCCCCTCTAAGAAGAGAAAGAGCGATTCCGGCGACAAGGGAGGGCCGAAGCCAGGTAAAGAATTCCCAAAGAACCGGAAGGAGATCAAAGCCAAGCGTCATTCAAAGACAGAAGATGATGGTAAGTCTGTTGTTGATAGCAGTAAGCCCTTCAAGCGACAGTTTAACAATAAGCCCGTTGATGACAAAAAGCTGAAAGACGCTAAACTGGATCACCGAAATTGGAAGGAGCTAACCGAGAATCGCAAAAGGAAGAGAAAACCTTATTATGACCTTCAGAAGGAACTCGTGGCATCATGGGAGAAGATGAGGCAAAGGAATATAAAAATTGAAGAAAGATCCAAGTTGATTTCAGAGACAATGAACAAAATGAAAGGAAAAATTCCAGATATTACGGGTTCCCACATTTCTTCACGCGTCTTACAGACGTGCATCAAGTATTGTCAGCCAGCAGAGAGGGACAGTGTTTATCAGGAGCTGCGTCCACATTTTTTAAAATTGGCACGAAATACTTATGCTGTACATCTTGTGACAAAGATGTTAGATCATGCAAACAAGGAACAATTGCAAGAAATTATATCTTCTCTTCATGGGCATGTTGTTGCTTTTCTCCGGCATCCAGTTGGATCAGCTGTTGTAGAACATGTCTTCAAACTTGCAAATGGAACTCAAAAGCAAGAACTTCTCTCAGAAATATATTCTGCAGAATTTCGGATATTCAAGGGTATCATCCCAAAGGGCAAGGGCAGATTAGTGGATTTGTTATCTGGTGAGCATCCATCAAAAAGGTCTGCAGTTTTGGAGCACATGACATTAGCATTACAGCCAATTCTTGAAAAAGGAATTGTTGACCACTCAATTGTGCATAGAGCTTTGTTGGAGTACATGTGTATATCAAACAAGTCATCTGTGTCAGATATAATTCAGCAGCTATCTGGGCCACTTCTTGTACGAATGATCCATACAAGAGATGGTTCAAAGGTTGGCGCATTTTGTATTATACATGGTGGTGCTAAGGAAAGAAAGAAGATTGTGAAAGGAATGAAAGGGCATGTAGTAAAGATTGCTCACGATGAATATGGATGTGTGATCCTCATGTGCATTCTCAGTTTTGTTGATGACACCAGTCTTGTTTCTAAGTTTATATTTCGTGAGCTAGAAAAAGATTTGAAAGAATTGGCATTAGCCAAGTATGGGCGGCGTCCACTTTTGCATCTTCTTTGCCCAAATGTACCTCGCTACTTTCCTGCAGATGTTCTGGAGACTCTAAGATCAACGATTCATTCTCTTACTACCTGTACCCAGGATGGGCCTCCCCAGTCTGCAGATGATGAACCTTCTGAAAGTCAAAAGCCATCTTCAGAGACAGATATCCCAGGTCTCAAAATTGATGAAAAAGATGAAGAGAATCTCGAAGAGAGTGAAGGGTTTGGGAAAATATCCAAAAAGGATTTTTCAACTAGAAGAATTGAACTTTTAACTAAGAGTGGATTCGCACAGAAACTTACAGAAATGTGTATGCAAAATGTAGGAGAACTTCTTCGTTCTCAGTATGGGAAGGACATTATTTTCGAGGTAGCAAATGGTGGGGCTGGAGATATTATGTGGCAGGTAGCAGCTGACAGTTTGACCGCTCTTCATAGAGCCATAGCAGATGTGGGTGCGTTGCCTCAACTAAATAATGAAGAAGGCTCTCAAAGTGATGAACATATATTTGTGCAATACCATTCCAGCAGGACAGTACGCAAGTTGATATTGGAGTCTCATGTACCTGATGGTGTCAATGCTCCCTCATTTGCCTCTATTTTGTGGGATGTGGCCTTAAAGGGCAAGTGCAAGATGTGGGCTCAAGGACACAGTGAGAAAGTTGTTTCTGCATTCCTCGATTGTTCAGACTTGGAAGTGAAAAACATGGCAAGTTCTGAGCTACAGCCACTTATTGATGCGGGGTTGTTGAAGATTGCGAGTGCTAAACATGTTTAG___GATGCTTTACAGAAATTTTGATATTGCTTTGACAAGCATGTGCATTGTATAGAAGTAAACTAAGATTCATCATTTATATGTTCTTACATGGTTTGCTCGATGCTCTCGAGAGTAAACTTCATTATAAGAAAATTTTGACATTTGATATTTATAAAATTCATATTTGGAAGAGAACATGCATGTATTCTGTAGGCTGGGATGTTTTAGACTCTAGCGAAATGATAAGGTTCATCATATTCAGTGTTAGAACACACCCTTCCTATATTTAAATGGATGAGATAACGTCTGTAATAAAAGGGCATTCCCCAAGCAAATCTGTGCATAATGGCTTACAGGGTTGATTACGGAAAGCTGATGTATCTAAGATAACATTCTCTTGTATGAAATC

Fln Alignment:

Contig24243___KELTENRKRKRKPYYDLQKELVASWEKMRQRNIKIEERSKLISETMNKMKGKIPDITGSHISSRVLQTCIKYCQPAERDSVYQELRPHFLKLARNTYAVHLVTKMLDHANKEQLQEIISSLHGHVVAFLRHPVGSAVVEHVFKLANGTQKQELLSEIYSAEFRIFKGIIPKGKGRLVDLLSGEHPSKRSAVLEHMTLALQPILEKGIVDHSIVHRALLEYMCISNKSSVSDIIQQLSGPLLVRMIHTRDGSKVGAFCIIHGGAKERKKIVKGMKGHVVKIAHDEYGCVILMCILSFVDDTSLVSKFIFRXXXXXXXXXXXXXYGRRPLLHLLCPNVPRYFPADVLETLRSTIHSLTTCTQDGPPQSADDEPSESQKPSSETDIPGLKIDXXXXXXXXXXXGFGKISKKDFSTRRIELLTKSGFAQKLTEMCMQNVGELLRSQYGKDIIFEVANGGAGDIMWQVAADSLTALHRAIADVGALPQLNNEEGSQSDEHIFVQYHSSRTVRKLILESHVPDGVNAPSFASILWDVALKGKCKMWAQGHSEKVVSAFLDCSDLEVKNMASSELQPLIDAGLLKIASAK
Q9LRZ3_______________KELTEARKKKRKPHYNLEQELVSLWEKMRRRNIGKEDRSKLISEAIRKMKGKVPEIAVSHVSSRVLQTCVKFCSQAEKDVLFTELQPQFLNLASNKYAVHFIQKMLDGASKQQLAACISSLRGHVAPLLRHVFGSLVVEHAYHLGSAAQKQELLAELYSTELQLFKGLTTSNEKTVVDIIA-KLGLQKGAVNRHMTAIIQPILEKGIVDHTITHKLLIEYLTIADKTSAADVLQLLTGSLLLRMVHTRDGSRLAMLSIKHGSAKERKKIIKAMKEHVKKMAFDQFGSMVLACIFSIVDDTKLVTKIIVRELEATLKDLVMDKNGRRPLLQLLHPNSSRYLSHDDLAALDLSVPSL--CSMDKSETSSKTKDTDGNEIGEETKDEQEDTVAEHSDHEENVTAMG--GKKDPLVRRQELLVNSGLAERLIDVCVENAEEFLQSKFGNEVMYEVAIGGSDGILCPSLSEKLCELYEAISSVAAEPK--PQESEKDSEHILENFHSSRTIRRLVL--------NRPGFASILFKKALSGKCRSWAQGHCSKILSAFVETEDVQVREMAKTELQVLVNEGTLKISATK

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
1090		66		33	0.997452
2089			75	25	0.996473
2090	75		25		0.996473
2092		75	25		0.996473
2318	11			88	0.923564
2446		11		88	0.923564
2447		11		88	0.923564
2600	87	12			0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain