SustainPineDB

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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene24207

Length: 481 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene24207
CAAGAATTCTCTCCTTTCTTTACAAGCTCAATCAGCAGCCGTTGAGTCTACTGGTCAAGCCACTGCCGAAGCAAAGGCTAGAGCTGAAGCCGCTGCCATTGAAGGAGCAGCTGCAGTTAAGCAAGCTGAACTACAATCCGAAGCTGAACTCATTAAATCAGAAGCCAAAGTCACCCAAAAGAAGGCCAAACAAGAAGCCGAAATTGCCCATCAAAAGGCTCTCGATGATTTGGAACTCTCCAAAGCTCGCGATTTAGCAGATATCGAGGCATCCAAATTCAAATCTATCGTAGACGCTCTCGGAGCTACTACTCTTGAAGCTATTGCTCAAGCCGGACCAGAAATGCAAGCCAAACTTTTGGGTGGTCTCGGATTACAAAGCTTCATGCTCACCGGAAATGACAACCCAATTGGTCTCTTTAGCAGTTACTAAATCCATAAAAGTGTCGATAAAATCATGTTCAATAAACGTTGCTTACCC

Ace file of the UniGene sp_v3.0_unigene24207 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Major vault protein n=1 Tax=Dictyostelium fasciculatum RepID=F4QCT9_9MYCE	-	-	1.0e-28	47%
FL-Next	tr=Predicted protein; Hordeum vulgare var. distichum (Two-rowed barley).	-	-	0.0	54%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: tr_plants

Fln subject: F2E078

Fln msg: query STOP codon is far from subject stop. Distance to subject end: 22 aas, your sequence is shorter than subject: 144 - 843

Fln protein: KNSLLSLQAQSAAVESTGQATAEAKARAEAAAIEGAAAVKQAELQSEAELIKSEAKVTQKKAKQEAEIAHQKALDDLELSKARDLADIEASKFKSIVDALGATTLEAIAQAGPEMQAKLLGGLGLQSFMLTGNDNPIGLFSSY*

Protein Length: 145

Fln nts: CAAGAATTCTCTCCTTTCTTTACAAGCTCAATCAGCAGCCGTTGAGTCTACTGGTCAAGCCACTGCCGAAGCAAAGGCTAGAGCTGAAGCCGCTGCCATTGAAGGAGCAGCTGCAGTTAAGCAAGCTGAACTACAATCCGAAGCTGAACTCATTAAATCAGAAGCCAAAGTCACCCAAAAGAAGGCCAAACAAGAAGCCGAAATTGCCCATCAAAAGGCTCTCGATGATTTGGAACTCTCCAAAGCTCGCGATTTAGCAGATATCGAGGCATCCAAATTCAAATCTATCGTAGACGCTCTCGGAGCTACTACTCTTGAAGCTATTGCTCAAGCCGGACCAGAAATGCAAGCCAAACTTTTGGGTGGTCTCGGATTACAAAGCTTCATGCTCACCGGAAATGACAACCCAATTGGTCTCTTTAGCAGTTACTAA___ATCCATAAAAGTGTCGATAAAATCATGTTCAATAAACGTTGCTTACCC

Fln Alignment:

Contig24207___LLSLQAQSAAVESTGQXXXXXXXXXXXXXXXXXXXXXXXELQSEAELIKSEAKVTQKKAKQEAEIAHQKALDDLELSKARDLADIEASKFKSIVDALGATTLEAIAQAGPEMQAKLLGGLGLQSFMLTGNDNPIGLFSS
F2E078_______________LLKLQAKTISVEATGQATADAVAKSDAALIVGKSELDQSRLRTDATRIKMQAELEQLQKRQKAEIDHRTQLNELELQKAEELAEIEAQKFKQIVDSIGADTIKAIAQAGPEMQAKLLQGLGLKGFMITDGNSPINLFGA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain