SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene24049

Length: 1249 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene24049

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative protein kinase 2 [Oryza sativa Japonica Group]	-	-	0.0	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	58%
Sma3	Receptor serine-threonine protein kinase, putative	-	-	1.65e-15	-

Source	ECs	Term	Type	e value	Identity
Sma3	Non-specific protein-tyrosine kinase.	EC:2.7.10.2	-	8.782e-14	-
Sma3		EC:2.7.11.3-	-	2.398e-11	-

Source	Gene names
Sma3	673I14.2; AT3G24550; AT4g02010; At1g07870; At1g20650; At1g26150; At1g49270; At1g52290; At1g68690; At1g70460; At1g76370; At2g20300; At2g28590; At3g20530; At3g58690/T20N10_40; At4g02010; At5g02800; At5g18610; At5g38560; B1130E07.8; B1331F11.28; F13F21.28; F

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	integral to plasma membrane	GO:0005887	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	protein kinase activity	GO:0004672	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein tyrosine kinase activity	GO:0004713	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	structural constituent of cell wall	GO:0005199	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	protoderm histogenesis	GO:0010068	Biological Process	-
Sma3	cuticle development	GO:0042335	Biological Process	-
Sma3	shoot development	GO:0048367	Biological Process	-
Sma3	organ formation	GO:0048645	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	IQ motif, EF-hand binding site	IPR000048	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Myosin head, motor domain	IPR001609	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Dilute	IPR002710	-	-
Sma3	Pistil-specific extensin-like protein	IPR003882	-	-
Sma3	Myosin, N-terminal, SH3-like	IPR004009	-	-
Sma3	Uncharacterised protein family UPF0197	IPR007915	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	SKG6/AXL2 alpha-helix transmembrane domain	IPR014805	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	Homeobox, conserved site	IPR017970	-	-
Sma3	Dil domain	IPR018444	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G25220.2	Protein kinase superfamily protein chr2:10742918-10745540 REVERSE LENGTH=437	53%
RefSeq	Arabidopsis thaliana	NP_180094.5	protein kinase domain-containing protein [Arabidopsis thaliana]	53%
RefSeq	Populus trichocarpa	XP_002299270.1	predicted protein [Populus trichocarpa]	56%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AA69

Fln msg: Separated hits, possible frame ERROR between 84 and 191, and overlapping frame ERROR between 370 and 360, Unexpected stop codon in the beginning of your sequence, Distance to subject end: 75 aas, your sequence is shorter than subject: 417 - 587

Fln protein: GRA*PIPGQATSLQQTKPLKSTRHEIQxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLCPVLPSSQPPALRKQSDIDDSDANNGMSLGPLLTRFSSFRTGKRNGCASAIEYSxxxxxxTNNFSSYNLLGQGGFGSVYRAQFPDDFCVAVKMLDENKKTGRL*ISGMNIKIPSL*ICLRWFEACTWKRFCDI*DSELRLHICMLQSEVELMSKIRHPNLVSSLGFCVHGKRRLLVYELMQNGSLEAHLHGPSHGSALTWHLRMKIALDTARGLEHLHDHCNSSIIHSDFKSANILLDASFNAKLSDFGLAVRAGGHMCSTDAELLGTLGYLAPEYLSDGKLTEKSDVYAFGVVLLELITGRKPVDKSMPAGCQSLVTWAKPQLTDRSKLPTIVDPMMKETVHLKHLYQVAA

Protein Length: 418

Fln nts: GGGCGCGCATGACCCATTCCTGGACAAGCAACATCCCTACAGCAAACAAAGCCCCTGAAGTCCACAAGACATGAAATTCAACAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTTTATGTCCAGTTCTTCCATCATCTCAACCTCCAGCATTACGAAAACAGTCAGATATTGATGACTCAGATGCCAATAATGGAATGTCACTTGGCCCCTTGCTTACTCGTTTCAGCTCTTTCAGAACTGGTAAAAGGAATGGATGCGCATCTGCTATAGAGTATTCTGxxxxxxxxxxxxxxxCTACAAATAATTTTAGTAGCTATAACCTCCTTGGGCAGGGAGGCTTTGGTTCTGTATACAGAGCTCAGTTCCCTGATGATTTTTGTGTTGCAGTCAAGATGCTAGATGAAAACAAGAAAACAGGCAGACTATGAATTTCAGGTATGAATATCAAGATTCCAAGTCTTTGAATCTGCCTGCGTTGGTTTGAAGCATGTACCTGGAAGAGGTTTTGTGACATTTAGGACAGTGAATTGCGTTTACATATATGCATGTTGCAGAGTGAAGTTGAACTAATGAGCAAAATCAGGCATCCAAACCTCGTGTCTTCGCTGGGTTTCTGTGTCCATGGGAAGAGAAGGCTGCTAGTATACGAGCTTATGCAAAACGGTTCTTTGGAAGCACACTTACACGGTCCATCTCATGGATCTGCACTTACATGGCATCTGCGTATGAAGATTGCTCTTGATACGGCCAGGGGTCTAGAGCATCTGCATGATCACTGCAATTCATCAATAATTCATAGTGATTTTAAATCAGCTAATATCCTTCTGGATGCAAGTTTCAATGCCAAACTTTCAGATTTTGGCCTAGCAGTAAGAGCTGGGGGACATATGTGCAGTACAGATGCTGAGCTATTAGGAACCCTGGGATATCTAGCTCCAGAGTACCTTTCTGATGGGAAACTGACGGAGAAAAGTGATGTTTATGCATTTGGAGTTGTTCTATTGGAGTTGATTACTGGCAGAAAACCTGTTGACAAATCTATGCCAGCTGGTTGCCAATCTCTTGTTACATGGGCCAAGCCACAGTTGACAGATAGGTCAAAGCTTCCAACAATTGTGGATCCTATGATGAAAGAGACTGTGCATTTGAAACACCTATATCAAGTGGCAGCTGT

Fln Alignment:

Contig24049___PIPGQATSLQQTKPLKSTRHEIQHxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLCPVLPSSQPPALRKQSDIDDSDANNGMSLGPLLTRFSSFRTGKRNGCASAIEYSVxxxxTNNFSSYNLLGQGGFGSVYRAQFPDDFCVAVKMLDENKKTGRL*ISGMNIKIPSL*ICLRWFEACTWKRFCDI*DSELRLHICMLQSEVELMSKIRHPNLVSSLGFCVHGKRRLLVYELMQNGSLEAHLHGPSHGSALTWHLRMKIALDTARGLEHLHDHCNSSIIHSDFKSANILLDASFNAKLSDFGLAVRAGGHMCSTDAELLGTLGYLAPEYLSDGKLTEKSDVYAFGVVLLELITGRKPVDKSMPAGCQSLVTWAKPQLTDRSKLPTIVDPMMKETVHLKHLYQVAA
D5AA69_______________PMASMSTSLQQAKSLKSTKQEMQHxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLCPVLPPSQPQALRKQSDNDDSDANNGMSIGPFLTRLSSFRTGKRKGCASAIEYSVxxxxTNNFSSYNFLGKGGFGSVYRAQFHDDFCVAVKMLDENRKQA---------------------------------DNEF-------QSEVELMSKIRHPNLVSLLGFCVHGKTRLLVYELMQNGSLEEHLHGPSHGAALTWHLRMKIALDTARGLEHLHEHCNSSIIHSDFKSANILLDASFNAKLSDFGLAVRAGGCICSTDVELLGTLGYLAPEYLFDGKLTEKSDVYAFGVVLLELITGRKPVDKSMPAGCQSLVTWAKPQLTDRSKLPTIVDPMIKETMHLKHLYQVAA

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
401	25	75			0.996473
404		25	75		0.996473
553		33		66	0.997452
683		33		66	0.997452
685		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain