SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene24046

Length: 2047 nt

UniGene Fasta

>sp_v3.0_unigene24046
CATATGAAATCAAAAGTAGTCCGAGCGTCTTGTTTATTGCTTTAATAACAGGGTGTTTTATTCGTGGGTTCCAGCATTTCGTTACATTTTGAGTTACCCGGAGAAATTCGAGAACGAGATTCTTCCGGAAAGAGGCTATTGAGAATTGATATTATATTCCGGAAAATACATGGGCAGCAGCACGGTGGAAGCCGAAGGCAGGGTCAAACCAGTAACCTGTTAAAATCAATTTTCGGTTTTTACGCTTGACAATGACTAATTTTGCAATTCTTTCTTCGGTTTGAATAACTTCTTTGAAATGGGTATCGTCCTGATCTCTGGATGAGAAGCTGTCTACTCAGAACTTCAGGGTTTGCAATACCAATTATCTGTTTTTAGGGTTTTCTCTAACAAGGTTAAACTGGGTTTCAGTGTGTTTTATGATTAATTTTTCATGTTCACGTAGGCAATAGAGAATGCTCGAAAATATGGAATGTTATCTGATCGCGAATTAAATGGGCACGGGTACTCTGAGAGCGGTCAGAAATTTGGGGGTTGTTTGATATTTAAGAAAAGAAGAAGAGAAAATCCGAATTGAAGATTCTGAATTGTATTATGGCAGATATGGGCTCTCTGAGATGTTCAAGTTTGCTAAAGATATTGTTTATGTTTATGCTTACCATTACCCCAATTCTTGCATCCGGGCGCCAGTTTATTTTGTTTTTAGTAAGACGAGGAAGTGAAAGAAGGTGCCCAGGGAGAATTAGGGGGAGAAGATAACAACTCATTGGAATTGGGGGTTATAAAGGAGGACTCAGATGAATTGGATGAGTTCGGGGATATGGAAGACAGATCAGTGGATGAGCTTGATCCGGGATCATGGAGAAAGATTTTGGAGAAAACTCTGAGCCGGGATAATATTTCATCAACAGAGGAGGGGTTGTATATATCTGGTGTGAATAAGATGATGTTTGCGGTCAGTGAAGGTGAGCCGGAACTCATGAAGGAAGCCATATCAGATCTTCATCTTGCTGCCCAGGGTGGTTATGCGCATGCCCAATCCACACTGGGTTTTTTGTATGACATCGGAAGTGGGGTTGAGCAGAGTGATGCAAAGGCTTTTTTGTATCATCATTTTGCTGCAGAAGGTGGGAACTTTCAGTCTAAGATGGCACTGGCTTACACCTATTATCGTCAACAGATGTATGAGAAATCTGTGAAGCTCTATGCGGAACTTGCGTCTGTAGCAGTGGCTAGCTTTTTTAGTTTCAAAGAATCACCATTGGTTGAGTCAGTTCGGATCAATGATGGAGCTGAAGAGAACAAAGAGGCACTAAGGAAGTCACGTGGCGAGGAAGATGATGATTTTCAAATTATTGAATATCAGGCCCAGAAAGGGAGTGCAGTGGCGATGTATAGACTTGGTATATTCTACTACTTTGGTTTGAGAGGGGTTCGCCGTGATCATGGGAAAGCACTATCATGGTTTCTTAGAGCAGTTGAGAAAGGAGACGCAAATTCAATGGAATTTCTTGGAGAAATGTATGCACGAGGTTCTGGAGTTGAAAGGAATTTTACTAGGGCACTAGAGTGGTTCAAGGCTGCCTCTAGGCGAAAGCGATTTTCTGCATTTAATGGCATTGGCTATTTGTATATGAAGGGTCATGGAGTAGAAAAGAAGAATTATACAATGGCAAGAGAATTCTTCAAGAAGGCAGCAGAAAATGACGACGTCAATGGGCATGGGAATTACAATCTGGGAGTGTTGTACTTGAAAGGATTGGGCGTGAAGAAAGACATCAAGGTAGCTTCTAGGTATTTTATAACAGCAGCCAATGCTGGTCAACCAAAGGCATTCTATCAATTGGCAAAAATGTTCCATAAAGGCATTGGTCTGAAAAAGGATTTGAAGATGGCCACTACATTGTATAAGCTTGTTGCAGAGAGAGGACCTTGGGGATCCTTGTTAAGATGGGCTTTAGAGTGTTACTTGAAAGGCCAAACCGGCAGAGCCCTGCTATTGTACTCGAGAGTTGCTGAACTTGGATATGAGGTTGCACAGAGTAAT

Ace file of the UniGene sp_v3.0_unigene24046

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[R] COG0790 FOG: TPR repeat, SEL1 subfamily	-	-	2.0e-20	27%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	78%

Source	Gene names
Sma3	At HRD3; At1g18260; At1g73570; F6D5.4; GSVIVT00017845001; Gm sel-1; ISP11; LOC_Os03g15350; Os03g0259300; OsI_10819; OsJ_10203; PHYPADRAFT_11530; PHYPADRAFT_117372; PHYPADRAFT_204384; POPTRDRAFT_569730; POPTRDRAFT_575012; RCOM_0566120; T9L24.27;

Source	GOs	Term	Type	Identity
Sma3	endoplasmic reticulum	GO:0005783	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	binding	GO:0005488	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	Sel1-like	IPR006597	-	-
Sma3	Tetratricopeptide TPR-3	IPR011716	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Tetratricopeptide repeat	IPR019734	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G18260.1	HCP-like superfamily protein chr1:6279047-6282008 REVERSE LENGTH=678	63%
RefSeq	Arabidopsis thaliana	NP_564049.1	Hr.3 like protein [Arabidopsis thaliana]	63%
RefSeq	Populus trichocarpa	XP_002322109.1	predicted protein [Populus trichocarpa]	65%

Full-Lengther Next Prediction

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
265		81		18	0.999994
333	10			90	0.90298
336	90			10	0.90298
402	14			85	0.993533
403	14		71		0.984337
404			71	14	0.984337
405		14	85		0.993533
406	14			85	0.993533
507	87			12	0.992554
509			10	90	0.90298
513	88			11	0.923564
516		11	88		0.923564
518			88	11	0.923564
520			11	88	0.923564
522	85			14	0.993533
524	85			14	0.993533
525	85	14			0.993533
528		14		85	0.993533
530		14	85		0.993533
531	14		85		0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain