SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene23767

Length: 601 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene23767 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PsbP domain-containing protein 2 [Arabidopsis thaliana] sp\|Q8VY52.1\|PPD2_ARATH RecName: Full=PsbP domain-containing protein 2, chloroplastic; AltName: Full=PsbP-related thylakoid lumenal protein 3; Flags: Precursor gb\|AAL62434.1\| unknown protein [Arabidop	-	-	4.0e-34	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	90%

Source	Gene names
Sma3	At2g28605; GSVIVT00019306001; OSIGBa0102D10.5; OsI_15970; PHYPADRAFT_221389; POPTRDRAFT_217280; PPD2; RCOM_0080260; T8O18.1; VITISV_011517;

Source	GOs	Term	Type	Identity
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	thylakoid	GO:0009579	Cellular Component	-
Sma3	oxygen evolving complex	GO:0009654	Cellular Component	-
Sma3	extrinsic to membrane	GO:0019898	Cellular Component	-
Sma3	calcium ion binding	GO:0005509	Molecular Function	-
Sma3	photosynthesis	GO:0015979	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Photosystem II PsbP, oxygen evolving complex	IPR002683	-	0.0	-
Sma3	Mog1/PsbP, alpha/beta/alpha sandwich	IPR016123	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G28605.1	Photosystem II reaction center PsbP family protein chr2:12254911-12255689 FORWARD LENGTH=232	2.99878e-43	56%
RefSeq	Arabidopsis thaliana	NP_850123.1	PsbP domain-containing protein 2 [Arabidopsis thaliana]	3.9937e-43	56%
RefSeq	Populus trichocarpa	XP_002309937.1	predicted protein, partial [Populus trichocarpa]	0.0	57%

Full-Lengther Next Prediction

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
131			25	75	1.0
161	12		87		0.992554
162		12	87		0.992554
164			87	12	0.992554
165	87			12	0.992554
307		66		33	0.997452
316		75		25	0.996473
519		25	75		0.996473
520		25		75	0.996473
521		25		75	0.996473
522	25		75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain