SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene22952

Length: 693 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene22952 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	2-cys peroxiredoxin n=2 Tax=Chlamydomonadales RepID=A8I2V3_CHLRE	-	-	0.0	68%
FL-Next	tr=2-cys peroxiredoxin; Chlamydomonas reinhardtii (Chlamydomonas smithii).	-	-	0.0	72%
Sma3	Thioredoxin peroxidase	-	-	5.284e-16	-

Source	ECs	Term	Type	e value	Identity
Sma3	Oxidoreductases, Acting on a peroxide as acceptor, Peroxidases.	EC:1.11.1.-	-	6.371e-06	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Glutathione metabolism	00480		6.371e-06	%
Sma3	Peroxiredoxin.	EC:1.11.1.15	-	4.339e-19	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Glutathione metabolism	00480		4.339e-19	%
Sma3	Metabolic pathways	01100		4.339e-19	%

Source	Gene names
Sma3	2-Cys PRx; At3g11630; At5g06290; BAS1; C2C-Prx; CHLREDRAFT_108953; CHLREDRAFT_142363; CHLREDRAFT_155464; F24K9.28; GSVIVT00021525001; Grc000117; Heak293_Cp051; LOC_Os02g33450; MHF15.19; MICPUCDRAFT_49495; MICPUN_109516; OSJNBa0014M17.2; OSTLU_12848; OSTLU

Source	GOs	Term	Type	Identity
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	chloroplast stroma	GO:0009570	Cellular Component	-
Sma3	thylakoid	GO:0009579	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	peroxidase activity	GO:0004601	Molecular Function	-
Sma3	antioxidant activity	GO:0016209	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	peroxiredoxin activity	GO:0051920	Molecular Function	-
Sma3	response to cold	GO:0009409	Biological Process	-
Sma3	defense response to bacterium	GO:0042742	Biological Process	-
Sma3	cell redox homeostasis	GO:0045454	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant	IPR000866	-	-
Sma3		IPR006662	-	-
Sma3		IPR012335	-	-
Sma3	Thioredoxin domain	IPR013766	-	-
Sma3		IPR015467	-	-
Sma3		IPR017936	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G11630.1	Thioredoxin superfamily protein chr3:3672189-3673937 FORWARD LENGTH=266	50%
RefSeq	Arabidopsis thaliana	NP_187769.1	2-Cys peroxiredoxin BAS1 [Arabidopsis thaliana]	50%
RefSeq	Populus trichocarpa	XP_002323394.1	2-cys peroxiredoxin [Populus trichocarpa]	53%

Full-Lengther Next Prediction

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
150	75		25		0.996473
450	66		33		1.0
510	11		88		0.923564
585		62	37		1.0
600	62	37			1.0
621		28		71	1.0
675	28		71		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain