SustainPineDB

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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene22282

Length: 196 nt

UniGene Fasta

>sp_v3.0_unigene22282
ATTGTTGTGGGAGGAAAGGAAGCAGCCATGTCGAAGAGAGGGCGCGGAGGTAGCGCAGGGAACAAGTTCAGGATGTCACTGGGTCTGCCAGTGGCAGCCACGGTGAACTGTGCAGATAACACAGGAGCCAAGAACTTGTACATAATTCTGTGAAGGGAATCAAGGGTCGTCTCAACAGACTTCCTGCGGCCTGTGT

Ace file of the UniGene sp_v3.0_unigene22282

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	60S ribosomal protein L23 n=41 Tax=Embryophyta RepID=RL23_ARATH	-	-	1.0e-18	95%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	100%
Sma3	60S ribosomal protein L23, putative	-	-	9.505e-09	-

Source	Gene names
Sma3	At1g04480; CHLREDRAFT_159282; F19P19.5; GSVIVT00020335001; GSVIVT00028518001; LOC_Os03g04590; LOC_Os10g32920; MICPUCDRAFT_37554; OJ1293_E04.23; OSJNBa0006L06.7; OSTLU_18267; Os02g0814700; Os03g0139100; Os10g0466700; OsI_09417; OsI_09939; OsI_09940; OsI_33

Source	GOs	Term	Type	Identity
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	cytosolic large ribosomal subunit	GO:0022625	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosomal protein L14b/L23e	IPR000218	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G04400.1	emb2171 Ribosomal protein L14p/L23e family protein chr3:1167339-1168308 FORWARD LENGTH=140	5.0e-21	95%
RefSeq	Arabidopsis thaliana	NP_563707.1	60S ribosomal protein L23 [Arabidopsis thaliana]	6.0e-21	95%
RefSeq	Populus trichocarpa	XP_002335793.1	predicted protein [Populus trichocarpa]	1.0e-21	100%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NS49

Fln msg: ERROR#3, very serious frame error, Overlapping hits, possible frame ERROR between 147 and 147, Distance to subject end: 83 aas, your sequence is shorter than subject: 56 - 140

Fln protein: MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIxxVKGIKGRLNRLPAAC

Protein Length: 57

Fln nts: ATTGTTGTGGGAGGAAAGGAAGCAGCC_-_ATGTCGAAGAGAGGGCGCGGAGGTAGCGCAGGGAACAAGTTCAGGATGTCACTGGGTCTGCCAGTGGCAGCCACGGTGAACTGTGCAGATAACACAGGAGCCAAGAACTTGTACATAxxxxxxGTGAAGGGAATCAAGGGTCGTCTCAACAGACTTCCTGCGGCCTGTGT

Fln Alignment:

Contig22282___MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPAAC
A9NS49_______________MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPAAC

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain