SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene22177

Length: 859 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene22177 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pentatricopeptide repeat-containing protein, putative n=1 Tax=Ricinus communis RepID=B9R809_RICCO	-	-	0.0	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	53%
Sma3	Agglutinin	-	-	1.12e-06	-

Source	Gene names
Sma3	At1g19715; At1g19720; At1g73040; F3N23.24; F6F9.23; GSVIVT00014540001; GSVIVT00034213001; GSVIVT00034214001; M35; OSJNBb0108E17.3; Os01g0706800; Os01g0775500; Os05g0508400; OsI_03450; OsI_03937; OsI_20561; OsI_20824; OsJ_03194; OsJ_03649; OsJ_19139; P0510

Source	GOs	Term	Type	Identity
Sma3	sugar binding	GO:0005529	Molecular Function	-
Sma3	mannose binding	GO:0005537	Molecular Function	-
Sma3	chitin binding	GO:0008061	Molecular Function	-
Sma3	growth factor activity	GO:0008083	Molecular Function	-
Sma3	cell proliferation	GO:0008283	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Peptidase C1A, papain C-terminal	IPR000668	-	-
Sma3	Mannose-binding lectin	IPR001229	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	LisH dimerisation motif	IPR006594	-	-
Sma3	CTLH, C-terminal LisH motif	IPR006595	-	-
Sma3	Peptidase C1A, papain	IPR013128	-	-
Sma3	CRA domain	IPR013144	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G73040.1	Mannose-binding lectin superfamily protein chr1:27475159-27475777 REVERSE LENGTH=176	57%
RefSeq	Arabidopsis thaliana	NP_177447.1	jacalin-like lectin domain-containing protein [Arabidopsis thaliana]	57%
RefSeq	Populus trichocarpa	XP_002307685.1	predicted protein, partial [Populus trichocarpa]	60%

Full-Lengther Next Prediction

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
408	66	33			0.997452
781	25		75		0.996473
809	75	25			0.996473
811	25			75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain