SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene22159

Length: 738 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene22159 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	calcium-dependent lipid-binding domain-containing plant phosphoribosyltransferase-like protein [Arabidopsis thaliana] emb\|CAB88261.1\| anthranilate phosphoribosyltransferase-like protein [Arabidopsis thaliana] gb\|AED91836.1\| calcium-dependent lipid-binding	-	-	0.0	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	69%
Sma3	Synaptotagmin, putative	-	-	2.615e-24	-

Source	Gene names
Sma3	AT1G22610; AT4g00700; AT4g11610; AT4g20080; At1g04150; At1g22610; At1g51570; At1g74720; At3g03680; At3g57880; At3g61300; At4g00700; At4g11610; At4g11620; At4g20080; At5g06850; At5g12970; At5g17980; At5g48060; F12K8.4; F19C24.20; F1M20.40; F20D22.8; F25A4.

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	endoplasmic reticulum	GO:0005783	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	anthranilate phosphoribosyltransferase activity	GO:0004048	Molecular Function	-
Sma3	glutathione peroxidase activity	GO:0004602	Molecular Function	-
Sma3	transferase activity	GO:0016740	Molecular Function	-
Sma3	transferase activity, transferring glycosyl groups	GO:0016757	Molecular Function	-
Sma3	response to oxidative stress	GO:0006979	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	C2 calcium-dependent membrane targeting	IPR000008	-	-
Sma3	Glutathione peroxidase	IPR000889	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Molybdopterin oxidoreductase, prokaryotic, conserved site	IPR006655	-	-
Sma3	Protein of unknown function DUF1118	IPR009500	-	-
Sma3		IPR012335	-	-
Sma3	Phosphoribosyltransferase C-terminal	IPR013583	-	-
Sma3	C2 membrane targeting protein	IPR018029	-	-
Sma3	Hemopexin/matrixin, conserved site	IPR018486	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G12970.1	Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein chr5:4102992-4105301 FORWARD LENGTH=769	60%
RefSeq	Arabidopsis thaliana	NP_196801.1	calcium-dependent lipid-binding domain-containing plant phosphoribosyltransferase-like protein [Arabidopsis thaliana]	60%
RefSeq	Populus trichocarpa	XP_002322682.1	predicted protein [Populus trichocarpa]	60%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LL63

Fln msg: Warning!, your query overlaps and the subject is separated, STOP codon was not found. Distance to subject end: 2 aas, your sequence is shorter than subject: 245 - 758

Fln protein: ELAVRFSCSSLLDVVQIYSQPLLPKMHYLHPLSLSHQDMLRNTAMKIVGLRLSRAEPPLRQEVVQYMLDTESNMWSMRRSKANWFRIMNVLSGIVSVAKWVDxxxxRPRMPPHMDTRISHADAVDQDELDEEFDPLQSSEASENVRMRYDRLRSLAARIQTVLGDLATQGERIQALLTWRDPRSTGIFIAICFMISFMLYTVHFKLVLLILAFYYLRHPRFREPLPASLSTSQTFACIIRPDNVE

Protein Length: 246

Fln nts: TTGAACTTGCAGTGCGTTTTTCCTGCTCTTCTTTGCTTGATGTTGTTCAGATTTACTCTCAGCCATTGCTTCCTAAGATGCATTATTTGCATCCCTTGAGCCTAAGTCATCAGGATATGTTAAGAAACACAGCAATGAAGATTGTTGGATTGCGATTATCTCGTGCTGAGCCACCTTTGAGGCAGGAAGTAGTGCAATATATGTTGGACACAGAATCTAATATGTGGAGCATGAGGAGAAGTAAGGCTAACTGGTTCAGAATTATGAATGTTCTCTCTGGAATTGTCTCTGTTGCCAAATGGGTTGATxxxxxxxxxxxxCGGCCTAGGATGCCACCGCACATGGATACACGAATTTCCCATGCAGATGCAGTTGATCAGGATGAACTTGATGAGGAATTCGATCCATTGCAGAGCTCCGAGGCTTCTGAAAATGTCAGAATGAGGTATGATCGATTAAGGAGTTTGGCTGCAAGGATACAGACTGTATTGGGTGATTTAGCTACGCAGGGGGAGAGAATTCAAGCTCTTCTTACTTGGAGAGATCCTCGTTCTACTGGCATTTTCATTGCTATATGTTTCATGATCTCGTTTATGTTGTACACTGTTCATTTCAAGCTAGTTTTGTTAATTCTAGCTTTCTACTATCTTCGCCATCCTAGATTCAGGGAGCCATTGCCTGCGTCCCTCTCAACTTCTCAGACGTTTGCCTGCATTATCAGACCAGATAATGTAGAAAT

Fln Alignment:

Contig22159___LAVRFSCSSLLDVVQIYSQPLLPKMHYLHPLSLSHQDMLRNTAMKIVGLRLSRAEPPLRQEVVQYMLDTESNMWSMRRSKANWFRIMNVLSGIVSVAKWVDDICxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxYMFRPRMPPHMDTRISHADAVDQDELDEEFDPLQSSEASENVRMRYDRLRSLAARIQTVLGDLATQGERIQALLTWRDPRSTGIFIAICFMISFMLYTVHFKLVLLILAFYYLRHPRFREPLPAS
B8LL63_______________LAVRFSCSSLMNMMHIYTQPLLPKMHYLHPLSVQQLEALRYQAMQIVAMRLSRAEPPLRREVVEYMLDVDSHMWSMRRSKANFFRIMNVLAALTAVGRWFSDICxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxFRFRPRHPPHMDTRLSHAELVHPDELDEEFDTFPSTKSSDIVRMRYDRLRSVAGRIQTVVGDMATQGERLQHLLSWRDPRATTIFVIFCLIAAIILYTTPFQVIAVVFVMYVLRHPRFRHRLPSA

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain