SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene22076

Length: 499 nt

UniGene Fasta

>sp_v3.0_unigene22076
TCTCCGAAGCCTTGAGCTGGGAGGTTGCCGCACTCTGCAGACGCTCCCAGACTCGGTTGGGAATCTGACGGGCCTCCGAAGTCTTGTCGTGGGTGAGTTTCGCGCTCTAGGGACGCTGCCAGACTCAGTTGGGAAGCTGACAGGTCTCCAAAGTCTTGAGCTGCGAGGGTGCCGTGCTCTGCAAATGCTCCCAGACTCAGTTGGGAATTTAAAGGGCCTCCAAATTCTTCAGCTGCGCCAGTGTTCCAATTTACAGGTGCTGCCCAAAGTTGAGCACTTGAGATCGTTGGTGAAGCTTGATGTGTCTGGGTGTCCCAAACTACAATGTAGTGTGGGAGTATTCGAGCAGCTGCGGCAACGACTGGGAGAAGGTTTCAGTGAAGAAAACTTGGGAGAAAGCTTCAGTGAAGAAAGCGAGTAGTAAATATAACAGCATTTAATAATCACAATCGTGGTCCAGTGGCCACAGTGTTCACTGCGCGCTGAATACAACCTTCAC

Ace file of the UniGene sp_v3.0_unigene22076

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative TIR/NBS/LRR disease resistance protein [Pinus taeda]	-	-	4.0e-17	40%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	62%

Source	Gene names
Sma3	POPTRDRAFT_595612;

Source	InterPros	Term	Type	Identity
Sma3	Toll/interleukin-1 receptor homology (TIR) domain	IPR000157	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	Leucine-rich repeat 3	IPR011713	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G69550.1	disease resistance protein (TIR-NBS-LRR class) chr1:26148836-26153374 REVERSE LENGTH=1400	1.0e-20	46%
RefSeq	Arabidopsis thaliana	NP_564971.2	TIR-NBS-LRR class disease resistance protein [Arabidopsis thaliana]	1.0e-20	46%
RefSeq	Populus trichocarpa	XP_002328446.1	tir-nbs-lrr resistance protein [Populus trichocarpa]	3.0e-22	50%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PQE2

Fln msg: your sequence is shorter than subject: 140 - 1071

Fln protein: LRSLELGGCRTLQTLPDSVGNLTGLRSLVVGEFRALGTLPDSVGKLTGLQSLELRGCRALQMLPDSVGNLKGLQILQLRQCSNLQVLPKVEHLRSLVKLDVSGCPKLQCSVGVFEQLRQRLGEGFSEENLGESFSEESE*

Protein Length: 141

Fln nts: TCTCCGAAGCCTTGAGCTGGGAGGTTGCCGCACTCTGCAGACGCTCCCAGACTCGGTTGGGAATCTGACGGGCCTCCGAAGTCTTGTCGTGGGTGAGTTTCGCGCTCTAGGGACGCTGCCAGACTCAGTTGGGAAGCTGACAGGTCTCCAAAGTCTTGAGCTGCGAGGGTGCCGTGCTCTGCAAATGCTCCCAGACTCAGTTGGGAATTTAAAGGGCCTCCAAATTCTTCAGCTGCGCCAGTGTTCCAATTTACAGGTGCTGCCCAAAGTTGAGCACTTGAGATCGTTGGTGAAGCTTGATGTGTCTGGGTGTCCCAAACTACAATGTAGTGTGGGAGTATTCGAGCAGCTGCGGCAACGACTGGGAGAAGGTTTCAGTGAAGAAAACTTGGGAGAAAGCTTCAGTGAAGAAAGCGAGTAG___TAAATATAACAGCATTTAATAATCACAATCGTGGTCCAGTGGCCACAGTGTTCACTGCGCGCTGAATACAACCTTCAC

Fln Alignment:

Contig22076___LRSLELGGCRTLQTLPDSVGNLTGLRSLVVGEFRALGTLPDSVGKLTGLQSLELRGCRALQMLPDSVGNLKGLQILQLRQCSNLQVLPK-VEHLRSLVKLDVSGCPKLQ
C0PQE2_______________LQTLYLSRCSTLQTLPDSVGNLTGLQTLYLSGCSTLQTLPDSVGNLTGLQTLYLSGCSTLQTLPDSVGNLTGLQTLNLDRCSTLQTLPDLVGNLKSLQTLDLDGCSTLQ

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
127	66		33		0.997452
141		66	33		0.997452
142	66		33		0.997452
144			66	33	0.997452
160		33	66		0.997452
164		66	33		0.997452
165	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain