SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene21927

Length: 2248 nt

UniGene Fasta

>sp_v3.0_unigene21927
ATTCGAATCAGCTAGGCAAACGGCCGAATAGTCGAATAGAATAAAATGAGCGAGAGCCGAATAGACGAATAGAATAAAAAGGGTGTGTTGGTGCAGAGTGGCAGCTGAGAAGACGAAAAAGGTTTAAGCAGGGTTTAAGGCTTTTACCCTTAGACTAAGGAAACAATGGCTTGGAGAATGCGCACTGCAGCTGTCATATTGCGCAATGCCCAGTTCAACACTCTACACACTCGATCTCCTCCACAGGAAGTAGTTAAACGCATTTTGCCCCCAAAATACGGTCTCACATGGGGGCGATTGCTGACAGGAGTGCTGTTGGGCTTTGGTATAGGCGGAGGAGCCTATGTTAGCACTGTGGATGAGGCTACATTCAGTGGATGGTTATTTGAAGCGACGAAATTCGTGAATCCTCTGTTCAGCTTTCTGGATCCAGAGGATGCTCATCAGTTTGCAATATGGGCAGCAGCCCATGGGTTGGTTCCAAGAGAGAAGAGGCCAGATCCATCCATATTGGAAGTTGACGTATGGGGAAGAAAATTTTCAAACCCAATTGGACTTGCAGCTGGTTTCGACAAAAATGCAGAGGCGGTGGAGGGTTTACTTGGTTTAGGTTTTGGCTTTGTAGAAGTTGGCTCGGTGACCCCAGTACCTCAAGAGGGAAATCCAAAGCCTCGTGTCTTCAGATTGCCGGAGCAGGGGGCCGTTATTAACCGATATGGATTCAATAGTGAGGGTATAGTGGCTGTAGCAAAGCGGTTGGGTGCACAGCATGCAAAACGAAAGCTTGCTGAAACATCAAGCACAACTTTGCCTACAGAAACAGAACAGCATAAATCTGGAGGAAAAGCGGGTCCTGGCATTCTTGGAGTTAACATTGGCAAGAATAAAACAAGTGAAGATGCAGCTGCTGACTATGTTCAGGGAGTTCACACATTGTCACAGTATGCTGACTATATGGTGATTAATGTTTCATCTCCAAATACACCTGGACTGCGGAAGCTCCAGGGGAGGAAACAATTGCAGGATCTAGTAAAGAAGGTACTTGCTGCACGTGATGAAATGCAGTGGGGAGAAGAGGGCCCACCACCTTTGCTTGTAAAAATTGCTCCTGACTTGAATAAACAAGACCTTGCTGACATTGCTGCGGTTGCACTTGCTCTTCGGTTGGATGGGCTGATTATATCGAATACAACTGTTTCAAGGCCAGATTCTGTCATAGGCTTGCCACATGCTGATGAAGTTGGTGGCTTGAGTGGAAAGCCACTGTTCATGTTGTCTACTAATACCCTACGAGAAATGTACCAACTTACACGGGGAAGAATTACTCTTATTGGCTGTGGGGGCATAAGCAGTGGTGAAGATGCATATAAGAAAATACGAGCTGGAGCAACTCTTGTGCAACTTTATACAGGGTTTTCATATGAAGGGCCAGCCCTGATTCCCCAGTTAAAGGCTGAATTGGCAGCATGCCTGGAAAGGGATGGGTTCAAGTCTGTGTATGAAGCTGTTGGTGCTGATTACAGATAGCTGATTAGCTTGGAGGCATGCAAGTAGGAATGCCTCTCCCATGTGCTATCATCTGCATGAACATTTGTTGCTAAAGGCAACATTTTTCATTATTGCGACTACAAACGGATTTTGAAGTATGGACATACATGTCAATTCCAATCCTAAGTGTTTCATAGCTTATGGTTAGCAGCAGATTGGGATGCTTATTTAGAAAGTTAATTATTCTTTTCTTCTGTCAGTGGTAAACGTAATCAAAATTGGGTAATCTTATTGAGGATTCTGTTCATTTATTGGAAGGCAACACTGATTGAAGCAATCAAATTTTGTGAAATAGACAATTAATTTTTCTTTGTGCATTACTTTGGGAACTTAAGCTTTGAGAGGTAGTTAGCTGAGCTGAATCATTTGAGTCATATACACGAAATGCCCTCTGCAGGGGAAGATTGCACGCAAATCCCTTCGTTGACAATCATACTGTGATGATATCAGGGTCTTGTAATTATGACTTTATCTCAGTCGATTTACATTTTTGTAGTGTGGCGGAACACTGCTTTTCATCATCTTCTTAATCTTCCGAGGATTGTGATACACTCACAGGCCTCGAATAACATTCAACCAAAAACTACCAACATTAACTCATCTTCTTGTGCCTACATGAAAATATGAAGGCTAAGGTTGACGTTTTGTAACTGGAGTTGGCATATATATTTATGTGGTACTTACTAATTCGTTTTACATT

Ace file of the UniGene sp_v3.0_unigene21927

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	dihydroorotate dehydrogenase [Arabidopsis thaliana] sp\|P32746.2\|PYRD_ARATH RecName: Full=Dihydroorotate dehydrogenase (quinone), mitochondrial; Short=DHOdehase; AltName: Full=Dihydroorotate oxidase; Flags: Precursor gb\|AAN64025.1\|AF454729_1 dihydroorotate	-	-	0.0	71%
FL-Next	sp=Dihydroorotate dehydrogenase (quinone), mitochondrial; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	79%
Sma3	Dihydroorotate dehydrogenase	-	-	6.285e-21	-

Source	ECs	Term	Type	e value	Identity
Sma3	Dihydroorotate oxidase.	EC:1.3.3.1	-	5.063e-08	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Pyrimidine metabolism	00240		5.063e-08	%
Sma3	Metabolic pathways	01100		5.063e-08	%

Source	Gene names
Sma3	At5g23300; CHLREDRAFT_152239; DHOD; GSVIVT00007090001; H0101F08.3; H0103C06.13; MICPUCDRAFT_44893; MICPUN_64581; MKD15.16; OSJNBa0064G10.3; OSTLU_13090; Os04g0676300; OsI_17913; OsJ_16613; Ot12g00230; PHATRDRAFT_48900; PHYPADRAFT_197321; PHYPADRAFT_70715;

Source	GOs	Term	Type	Identity
Sma3	mitochondrial inner membrane	GO:0005743	Cellular Component	-
Sma3	plastid	GO:0009536	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	dihydroorotate dehydrogenase activity	GO:0004152	Molecular Function	-
Sma3	dihydroorotate oxidase activity	GO:0004158	Molecular Function	-
Sma3	'de novo' pyrimidine base biosynthetic process	GO:0006207	Biological Process	-
Sma3	UMP biosynthetic process	GO:0006222	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Dihydroorotate dehydrogenase, conserved site	IPR001295	-	-
Sma3	Dihydroorotate dehydrogenase, class 2	IPR005719	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Dihydroorotate dehydrogenase, class 1/ 2	IPR012135	-	-
Sma3	Aldolase-type TIM barrel	IPR013785	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G23300.1	PYRD pyrimidine d chr5:7847792-7850243 REVERSE LENGTH=460	79%
RefSeq	Arabidopsis thaliana	NP_568428.1	dihydroorotate dehydrogenase [Arabidopsis thaliana]	79%
RefSeq	Populus trichocarpa	XP_002306374.1	predicted protein [Populus trichocarpa]	80%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: sp_plants

Fln subject: P32746

Fln msg: Unexpected STOP codon in 5 prime region,

Fln protein: MAWRMRTAAVILRNAQFNTLHTRSPPQEVVKRILPPKYGLTWGRLLTGVLLGFGIGGGAYVSTVDEATFSGWLFEATKFVNPLFSFLDPEDAHQFAIWAAAHGLVPREKRPDPSILEVDVWGRKFSNPIGLAAGFDKNAEAVEGLLGLGFGFVEVGSVTPVPQEGNPKPRVFRLPEQGAVINRYGFNSEGIVAVAKRLGAQHAKRKLAETSSTTLPTETEQHKSGGKAGPGILGVNIGKNKTSEDAAADYVQGVHTLSQYADYMVINVSSPNTPGLRKLQGRKQLQDLVKKVLAARDEMQWGEEGPPPLLVKIAPDLNKQDLADIAAVALALRLDGLIISNTTVSRPDSVIGLPHADEVGGLSGKPLFMLSTNTLREMYQLTRGRITLIGCGGISSGEDAYKKIRAGATLVQLYTGFSYEGPALIPQLKAELAACLERDGFKSVYEAVGADYR*

Protein Length: 455

Fln nts: ATTCGAATCAGCTAGGCAAACGGCCGAATAGTCGAATAGAATAAAATGAGCGAGAGCCGAATAGACGAATAGAATAAAAAGGGTGTGTTGGTGCAGAGTGGCAGCTGAGAAGACGAAAAAGGTTTAAGCAGGGTTTAAGGCTTTTACCCTTAGACTAAGGAAACA_-_ATGGCTTGGAGAATGCGCACTGCAGCTGTCATATTGCGCAATGCCCAGTTCAACACTCTACACACTCGATCTCCTCCACAGGAAGTAGTTAAACGCATTTTGCCCCCAAAATACGGTCTCACATGGGGGCGATTGCTGACAGGAGTGCTGTTGGGCTTTGGTATAGGCGGAGGAGCCTATGTTAGCACTGTGGATGAGGCTACATTCAGTGGATGGTTATTTGAAGCGACGAAATTCGTGAATCCTCTGTTCAGCTTTCTGGATCCAGAGGATGCTCATCAGTTTGCAATATGGGCAGCAGCCCATGGGTTGGTTCCAAGAGAGAAGAGGCCAGATCCATCCATATTGGAAGTTGACGTATGGGGAAGAAAATTTTCAAACCCAATTGGACTTGCAGCTGGTTTCGACAAAAATGCAGAGGCGGTGGAGGGTTTACTTGGTTTAGGTTTTGGCTTTGTAGAAGTTGGCTCGGTGACCCCAGTACCTCAAGAGGGAAATCCAAAGCCTCGTGTCTTCAGATTGCCGGAGCAGGGGGCCGTTATTAACCGATATGGATTCAATAGTGAGGGTATAGTGGCTGTAGCAAAGCGGTTGGGTGCACAGCATGCAAAACGAAAGCTTGCTGAAACATCAAGCACAACTTTGCCTACAGAAACAGAACAGCATAAATCTGGAGGAAAAGCGGGTCCTGGCATTCTTGGAGTTAACATTGGCAAGAATAAAACAAGTGAAGATGCAGCTGCTGACTATGTTCAGGGAGTTCACACATTGTCACAGTATGCTGACTATATGGTGATTAATGTTTCATCTCCAAATACACCTGGACTGCGGAAGCTCCAGGGGAGGAAACAATTGCAGGATCTAGTAAAGAAGGTACTTGCTGCACGTGATGAAATGCAGTGGGGAGAAGAGGGCCCACCACCTTTGCTTGTAAAAATTGCTCCTGACTTGAATAAACAAGACCTTGCTGACATTGCTGCGGTTGCACTTGCTCTTCGGTTGGATGGGCTGATTATATCGAATACAACTGTTTCAAGGCCAGATTCTGTCATAGGCTTGCCACATGCTGATGAAGTTGGTGGCTTGAGTGGAAAGCCACTGTTCATGTTGTCTACTAATACCCTACGAGAAATGTACCAACTTACACGGGGAAGAATTACTCTTATTGGCTGTGGGGGCATAAGCAGTGGTGAAGATGCATATAAGAAAATACGAGCTGGAGCAACTCTTGTGCAACTTTATACAGGGTTTTCATATGAAGGGCCAGCCCTGATTCCCCAGTTAAAGGCTGAATTGGCAGCATGCCTGGAAAGGGATGGGTTCAAGTCTGTGTATGAAGCTGTTGGTGCTGATTACAGATAGCTGATTAGCTTGGAGGCATGCAAGTAGGAATGCCTCTCCCATGTGCTATCATCTGCATGAACATTTGTTGCTAAAGGCAACATTTTTCATTATTGCGACTACAAACGGATTTTGAAGTATGGACATACATGTCAATTCCAATCCTAAGTGTTTCATAGCTTATGGTTAGCAGCAGATTGGGATGCTTATTTAGAAAGTTAATTATTCTTTTCTTCTGTCAGTGGTAAACGTAATCAAAATTGGGTAATCTTATTGAGGATTCTGTTCATTTATTGGAAGGCAACACTGATTGAAGCAATCAAATTTTGTGAAATAGACAATTAATTTTTCTTTGTGCATTACTTTGGGAACTTAAGCTTTGAGAGGTAGTTAGCTGAGCTGAATCATTTGAGTCATATACACGAAATGCCCTCTGCAGGGGAAGATTGCACGCAAATCCCTTCGTTGACAATCATACTGTGATGATATCAGGGTCTTGTAATTATGACTTTATCTCAGTCGATTTACATTTTTGTAGTGTGGCGGAACACTGCTTTTCATCATCTTCTTAATCTTCCGAGGATTGTGATACACTCACAGGCCTCGAATAACATTCAACCAAAAACTACCAACATTAACTCATCTTCTTGTGCCTACATGAAAATATGAAGGCTAAGGTTGACGTTTTGTAACTGGAGTTGGCATATATATTTATGTGGTACTTACTAATTCGTTTTACATT

Fln Alignment:

Contig21927___AYVSTVDEATFSGWLFEATKFVNPLFSFLDPEDAHQFAIWAAAHGLVPREKRPDPSILEVDVWGRKFSNPIGLAAGFDKNXXXXXXXXXXXXXXXXXXSVTPVPQEGNPKPRVFRLPEQGAVINRYGFNSEGIVAVAKRLGAQHAKRKLAXXXXXXXXXXXXQHKSGGKAGPGILGVNIGKNKTSEDAAADYVQGVHTLSQYADYMVINVSSPNTPGLRKLQGRKQLQDLVKKVLAARDEMQWGEEGPPPLLVKIAPDLNKQXXXXXXXXXXXXXXXGLIISNTTVSRPDSVIGLPHADEVGGLSGKPLFMLSTNTLREMYQLTRGRITLIGCGGISSGEDAYKKIRAGATLVQLYTGFSYEGPALIPQLKAELAACLERDGFKSVYEAVGADYR
P32746_______________AYVSTADEATFCGWLFNATKVVNPFFALLDAEFAHKLAVSAAARGWVPREKRPDPAILGLEVWGRKFSNPIGLAAGFDKNAEATEGLLGMGFGFVEVGSVTPVPQEGNPKPRIFRLSQEGAIINRCGFNSEGIVVVAKRLGAQHGKRMLAETSATSSSPSDDV-KPGGKSGPGILGVNLGKNKTSEDAAADYVQGVHNLSQYADYLVINVSSPNTAGLRMLQGRKQLKDLVKKVQAARDEMQWGDEGPPPLLVKIAPDLSRGELEDIAAVALALHLDGLIISNTTVSRPDAVSNNPVATETGGLSGKPLFALSTNMLRDMYTLTRGKIPLIGCGGVSSGEDAYKKIRAGATLVQLYTGFAYGGPALIPQIKEELVKCLERDGFKSIHEAIGADHR

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
199	16			83	0.994512
665		87		12	0.992554
688	12	87			0.992554
690	14		85		0.993533
691			85	14	0.993533
692	85			14	0.993533
703	50		50		1.0
708	50			50	1.0
761	25		75		0.996473
762		25		75	0.996473
763	20		80		0.995493
764		80		20	0.995493
765	80			20	0.995493
888	60		40		1.0
975	11			88	0.923564
980	88			11	0.923564
1053		42		57	1.0
1088	25	75			0.996473
1347	40			60	1.0
1929		63	36		1.0
1970		63		36	1.0
2073	16			83	0.994512
2075	16			83	0.994512
2077	83			16	0.994512
2103	75		25		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain