SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene21730

Length: 2018 nt

UniGene Fasta

>sp_v3.0_unigene21730
ACCATAACCATGTCCTGCCGTGCGTCCAGCGATGGCGCCATGTATGCGCATACGCTGGGATTTTCCTGGAGGATCTCCTCTGTCAAGTACATATATCTCTTTTTATTGCGGATTTGTCACACATTCTTCTAAATTTCTCCTTGAGCTCTGTCATATGCTCACTGTTGGTGATTTTGAAGTAGTAATCCGGATAAGTACTCTGATCGACCGCATTGGGAGGAGTAGCAGTACCTATAGCGAGGATGTTGGCTGGGCCATCTGCCCTCTGAGCCTTCCTGAAAGCCTCCAAATCCGCCATCATTCCTCCAGCCATAATGATTTTAGGACTCTCGCTGCTCACTACTCGTCAGCCACACAATTCAGCCTAAAATTCTCCACTCAGCTCCTCTTCTGCTCGGAGACTCCACGCTCCAGTCTCCACTGCAGTTCAGGAATTCATTCGTTGAATTTAAGGCTGAATTGTGTGGCTGACGAGTGGTGAGCAGCGAGAGTCCTAAAATCATTATGGCTGGAGGAATGATGGCGGATTTGGAGGCTTTCAGGAAGGCTCAGAGGGCAGATGGCCCAGCCAACATCCTCGCTATAGGTACTGCTACTCCTCCCAATGCGGTCGATCAGAGTACTTATCCGGATTACTACTTCAAAATCACCAACAGCGAGCATATGACAGAGCTCAAGGAGAAATTTAGAAGAATGTGTGACAAATCCGCAATAAAAAAGAGATATATGTACTTGACAGAGGAGATCCTCCAGGAAAATCCCAGCGTATGTGCATACATGGCGCCATCGCTGGACGCACGGCAGGACATGGTTGTGGTGGAAGTGCCCAGGCTTGGAAAAGAAGCGGCCGCCAAGGCCATCAAGGAGTGGGGGCAGCCCAAATCTAAGATCACTCATGTCATTTTCTGCACAACCAGTGGAGTGGACATGCCCGGAGCTGATTATCAGCTGACAAAGCTTCTCGGCCTCCGCCCCAGCGTTAAGAGAGTCATGATGTACCAACAGGGCTGCTTTGCTGGAGGCACCGTTCTCCGCGTGGCTAAAGATCTGGCAGAGAACAATCGGGGCGCTCGGGTCCTGGTCGTTTGCAGTGAAATCACGGCTGTTACATTCCGTGGCCCCTCCGACACTCACCTCGACAGCATGGTCGGCCAAGCTCTCTTTGGGGACGGTGCGGCTGCCCTCATCGTGGGAGCCGATCCGGTCCCTGAAGTGGAGAAGCCCTGTTTCGAGATGCTGTGGACCTCACAGACAATTCTTCCCGACAGCGACGGAGCCATCGATGGACACCTGAGAGAGGTAGGCCTCACCTTTCACCTTCTCAAAGACGTTCCAGGCCTTATTTCCAAGAACATAGAAAAGAGTTTGGTTGAGGCATTCCAGCAATTCGGAATCTCGGACTGGAACCAGTTATTCTGGATCGCCCATCCAGGAGGTCCTGCTATTCTGGATCAAGTGGAGGCCAAGCTGAATCTGGATCCCAAGAAACTGAGGGCCACCAGGCAAGTACTGAGCGATTATGGAAACATGTCGAGCGCCTGCGTGCACTTCATCTTGGACGAGATGAGGAAGTCATCTCATCAAAACGGATGTTCGACAACCGGAGAGGGATTGGATGTGGGAGTTCTGTTTGGATTCGGGCCGGGCCTCACTGTAGAAACAGTCGTCCTCAAGAGCGTTCCCCTGCAGTAATTGAACAACAATAGTCTCAAAAATAAATCTTGTTACTCGTTACGGTAAATATTTGGTTTTGGTTGTGTAAGCTTCGCAGGAATCAGAGTGAAATTAACCCGAATAATTGATTATTGGTTCTTGCTTGGCGGGGTATTATGTAAACGACCGCAGTCATATCATTAGAATTTTCATATGGTATATACTATTCCAAGCTTTTCTTAATAACACTGTTATGTTATTCGAGTTCATCGTGGACAAAGTTTTCAATTATTAGTGTTTATATGGTTGGTTATAGAGCTCTGGTTTCTACAGTAATGATATCAATTTATCGGGAAGGTTTCTAC

Ace file of the UniGene sp_v3.0_unigene21730

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Chalcone synthase n=57 Tax=Pinaceae RepID=CHSY_PINSY	-	-	0.0	96%
FL-Next	tr=Chalcone synthase; Pinus pinaster (Maritime pine).	-	-	0.0	100%

Source	ECs	Term	Type	e value	Identity
Sma3	Naringenin-chalcone synthase.	EC:2.3.1.74	-	0.0	-

Source	KEGGs	Term	Identity
Sma3	Flavonoid biosynthesis	00941	%
Sma3	Biosynthesis of phenylpropanoids	01061	%
Sma3	Metabolic pathways	01100	%
Sma3	Biosynthesis of secondary metabolites	01110	%

Source	Gene names
Sma3	chs1;

Source	GOs	Term	Type	Identity
Sma3		GO:0008415	Molecular Function	-
Sma3	naringenin-chalcone synthase activity	GO:0016210	Molecular Function	-
Sma3	flavonoid biosynthetic process	GO:0009813	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Chalcone/stilbene synthase, C-terminal	IPR012328	-	-
Sma3	Chalcone/stilbene synthase, active site	IPR018088	-	-
Sma3	Chalcone/stilbene synthase, N-terminal	IPR001099	-	-
Sma3	Polyketide synthase, type III	IPR011141	-	-
Sma3	Thiolase-like, subgroup	IPR016038	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G13930.1	CHS, TT4, ATCHS Chalcone and stilbene synthase family protein chr5:4488762-4490035 FORWARD LENGTH=395	81%
RefSeq	Arabidopsis thaliana	NP_196897.1	chalcone synthase [Arabidopsis thaliana]	81%
RefSeq	Populus trichocarpa	XP_002299281.1	chalcone synthase [Populus trichocarpa]	84%

Full-Lengther Next Prediction

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
971	16		83		0.994512
1016	10	90			0.90298
1020	90		10		0.90298
1467	5		94		1.0
1587		98		1	0.996033
1681	1	94			0.999999
1808			83	15	1.0
1894		2		97	0.987066
1920	6	6		82	0.999887
1922	81	13		4	1.0
1923	15			85	1.0
1924	11	88			0.999937
1925	11		88		0.999937
1926	11			88	0.999952
1927	11		88		0.999952
1928	11		88		0.999952
1945	83		16		0.994512
1948	83		16		0.994512
1978	40		60		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain