SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene21666

Length: 487 nt

UniGene Fasta

>sp_v3.0_unigene21666
GTCGGAGATCGATCTTGAAATCCAAACACTAGAGAGACTAGAGTGTTGTTTTTCTCTGTTTGTTCTAATCGGGTATTGCAGCAAAGAAGAAGAGCACAAGAACGACAAATGGCACCGCATTGAGCGATCCCGTGGAAAATTCCTTCGGCGTTTCCGGCTGCCGGAGAATGTGAAGGTGGAAGAGATAAAGGCGAGCATGGAAAACGGGGTGCTGACCGTGACAGTGCCGAAGCAGCCTGAACCCCAACCTCCGCAACCCAAATCCATCGAGATCTCTGGTTGACCTCTCACGCGGTATGAGGATGTCATAGTAGACCTGCAGTGGCCGTAGAGGGGAAATCAATTGCAGGAATAATCTCTTTCTGTGATAATTCCTGCAATTGATTTCCCCTCTGCTGGCTTTACAACCAACAGTGCTCCTACATTGTGCTGAGTCATAGACTTCACTGCATCATACACTGTGTCCTCTGTATTGCACCACAGCCAA

Ace file of the UniGene sp_v3.0_unigene21666

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Low molecular weight heat-shock protein n=7 Tax=Pinaceae RepID=Q40935_PSEMZ	-	-	6.0e-19	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	68%
Sma3	Heat-shock protein, putative	-	-	8.982e-34	-

Source	Gene names
Sma3	At1g07400; At1g07400/F22G5_20; At1g53540; At1g59860; At2g29500; At3g46230; At5g10860; At5g59720; BcHSP; BcHSP17.6; CJHSP17; F12M12_200; F22G10.20; F23H11.18; GSVIVT00001312001; GSVIVT00018308001; GSVIVT00018328001; GSVIVT00018349001; GSVIVT00018355001; GS

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	response to stress	GO:0006950	Biological Process	-
Sma3	response to oxidative stress	GO:0006979	Biological Process	-
Sma3	response to heat	GO:0009408	Biological Process	-
Sma3	response to high light intensity	GO:0009644	Biological Process	-
Sma3	response to salt stress	GO:0009651	Biological Process	-
Sma3	heat acclimation	GO:0010286	Biological Process	-
Sma3	response to hydrogen peroxide	GO:0042542	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Cystathionine beta-synthase, core	IPR000644	-	-
Sma3	Heat shock protein Hsp20	IPR002068	-	-
Sma3	Peptidase S24/S26A/S26B/S26C, beta-ribbon domain	IPR011056	-	-
Sma3	Peptidase S24/S26A/S26B	IPR019759	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G53540.1	HSP20-like chaperones superfamily protein chr1:19980510-19980983 FORWARD LENGTH=157	2.0e-21	70%
RefSeq	Arabidopsis thaliana	NP_175759.1	HSP20-like chaperone [Arabidopsis thaliana]	2.0e-21	70%
RefSeq	Populus trichocarpa	XP_002312132.1	predicted protein [Populus trichocarpa]	4.0e-22	78%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P1P3

Fln msg: your sequence is shorter than subject: 94 - 160

Fln protein: SEIDLEIQTLERLECCFSLFVLIGYCSKEEEHKNDKWHRIERSRGKFLRRFRLPENVKVEEIKASMENGVLTVTVPKQPEPQPPQPKSIEISG*

Protein Length: 95

Fln nts: GTCGGAGATCGATCTTGAAATCCAAACACTAGAGAGACTAGAGTGTTGTTTTTCTCTGTTTGTTCTAATCGGGTATTGCAGCAAAGAAGAAGAGCACAAGAACGACAAATGGCACCGCATTGAGCGATCCCGTGGAAAATTCCTTCGGCGTTTCCGGCTGCCGGAGAATGTGAAGGTGGAAGAGATAAAGGCGAGCATGGAAAACGGGGTGCTGACCGTGACAGTGCCGAAGCAGCCTGAACCCCAACCTCCGCAACCCAAATCCATCGAGATCTCTGGTTGA___CCTCTCACGCGGTATGAGGATGTCATAGTAGACCTGCAGTGGCCGTAGAGGGGAAATCAATTGCAGGAATAATCTCTTTCTGTGATAATTCCTGCAATTGATTTCCCCTCTGCTGGCTTTACAACCAACAGTGCTCCTACATTGTGCTGAGTCATAGACTTCACTGCATCATACACTGTGTCCTCTGTATTGCACCACAGCCAA

Fln Alignment:

Contig21666___EIDLEIQTLERLECCFSLFVLIGYCSKEEEHKNDKWHRIERSRGKFLRRFRLPENVKVEEIKASMENGVLTVTV
A9P1P3_______________EVKIELEEGQRI------LQISGERSKEEEHKNDKWHRIERSRGKFLRRFRLPENAKVEEMKASMENGVLTVTV

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
165			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain