SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene21279

Length: 492 nt

UniGene Fasta

>sp_v3.0_unigene21279
ATGGGGAACTCAGTGAAAGGTTTATAAACCGGTATCTTTGCTATGGATCCAGAGGCCCCTCAGACTTCGCTTCCAGTAGAATTTCCTGTCACAGATATCTGTATAGAGGAAACCCCTCATAAAGAGACTTGGAATAACAGTGATTTGAAGAGTTTATTAGATGATGATGGCCGCCCGGCACGCGCAGGTACCATGTGGACTGCAAGCGCTCATATTATCACGGCAGTGATAGGCTCAGGAGTGCTTTCGCTTGCATGGGCAATTTCTCAACTAGGATGGATAGCTGGACCTGGGGTTTTGGTTGCTTTCTCTTTCATAACGTTTTATACTTCTGCTTTGCTTGCCGACTGCTACAGATATCCTGATCCAGTAAAAGGAAAAAGAAACTACACCTACATGGATGCCGTTAAAGCAAATTTAGGTTGTTTGATACTAGATGGCTCTAATCTGATTTTTACTATTTGTTAGGTTATCAAGAAATCACAGCTACTG

Ace file of the UniGene sp_v3.0_unigene21279

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Amino acid transporter, putative n=2 Tax=Ricinus communis RepID=B9R6S0_RICCO	-	-	7.0e-34	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	66%
Sma3	Amino acid permease	-	-	0.0	-

Source	Gene names
Sma3	24K23.18; AAP; AAP1; AAP2; AAP3; AAP4; AAP5; AAP6; AAPA; AAPB; AAPC; AT5G23810; At1g10010; At1g44100; At1g58360; At1g77380; At5g09220; At5g23810; At5g49630; At5g63850; B1065E10.27; B1370C05.25; F19C14.3; F2P24.9; GSVIVT00007991001; GSVIVT00015029001; GSVI

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	integral to plasma membrane	GO:0005887	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	amino acid transmembrane transporter activity	GO:0015171	Molecular Function	-
Sma3	acidic amino acid transmembrane transporter activity	GO:0015172	Molecular Function	-
Sma3	neutral amino acid transmembrane transporter activity	GO:0015175	Molecular Function	-
Sma3	amino acid transport	GO:0006865	Biological Process	-
Sma3	acidic amino acid transport	GO:0015800	Biological Process	-
Sma3	basic amino acid transport	GO:0015802	Biological Process	-
Sma3	neutral amino acid transport	GO:0015804	Biological Process	-
Sma3	aspartate transport	GO:0015810	Biological Process	-
Sma3	tryptophan transport	GO:0015827	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Amino acid transporter, transmembrane	IPR013057	-	0.0	-
Sma3	Aldo/keto reductase, conserved site	IPR018170	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G63850.1	AAP4 amino acid permease 4 chr5:25551494-25553374 FORWARD LENGTH=466	6.0e-39	76%
RefSeq	Arabidopsis thaliana	NP_201190.1	amino acid permease 4 [Arabidopsis thaliana]	7.0e-39	76%
RefSeq	Populus trichocarpa	XP_002333631.1	amino acid permease [Populus trichocarpa]	2.0e-40	78%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQS2

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 342 aas, your sequence is shorter than subject: 142 - 492

Fln protein: MDPEAPQTSLPVEFPVTDICIEETPHKETWNNSDLKSLLDDDGRPARAGTMWTASAHIITAVIGSGVLSLAWAISQLGWIAGPGVLVAFSFITFYTSALLADCYRYPDPVKGKRNYTYMDAVKANLGCLILDGSNLIFTIC*

Protein Length: 143

Fln nts: ATGGGGAACTCAGTGAAAGGTTTATAAACCGGTATCTTTGCT_-_ATGGATCCAGAGGCCCCTCAGACTTCGCTTCCAGTAGAATTTCCTGTCACAGATATCTGTATAGAGGAAACCCCTCATAAAGAGACTTGGAATAACAGTGATTTGAAGAGTTTATTAGATGATGATGGCCGCCCGGCACGCGCAGGTACCATGTGGACTGCAAGCGCTCATATTATCACGGCAGTGATAGGCTCAGGAGTGCTTTCGCTTGCATGGGCAATTTCTCAACTAGGATGGATAGCTGGACCTGGGGTTTTGGTTGCTTTCTCTTTCATAACGTTTTATACTTCTGCTTTGCTTGCCGACTGCTACAGATATCCTGATCCAGTAAAAGGAAAAAGAAACTACACCTACATGGATGCCGTTAAAGCAAATTTAGGTTGTTTGATACTAGATGGCTCTAATCTGATTTTTACTATTTGTTAGGTTATCAAGAAATCACAGCTACTG

Fln Alignment:

Contig21279___MDPEAPQTSLPVEFPVTDICIEETPHKETWNNXXXXXXXXXXGRPARAGTMWTASAHIITAVIGSGVLSLAWAISQLGWIAGPGVLVAFSFITFYTSALLADCYRYPDPVKGKRNYTYMDAVKANLGCL
B8LQS2_______________MDREGTQTSLELELPSRNHASDIEDHRRHNGHSLDSEKFDDDGRPRRTGTLWTASAHIITAVIGSGVLSLAWSMAQLGWIAGPAVLIAFSFITLYTSALLADCYRSLDPVNGKRNYNYMAAVKANLGGL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain