SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene21178

Length: 1258 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene21178

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	enhanced disease susceptibility 1 protein [Solanum tuberosum]	-	-	3.99931e-42	40%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	77%
Sma3	EDS1	-	-	5.002e-10	-

Source	Gene names
Sma3	EDR1; LES1_20t00001;

Source	GOs	Term	Type	e value	Identity
Sma3	triglyceride lipase activity	GO:0004806	Molecular Function	0.0	-
Sma3	lipid metabolic process	GO:0006629	Biological Process	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Lipase, class 3	IPR002921	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NVM4

Fln msg: your sequence is shorter than subject: 294 - 650

Fln protein: LNELSEIPLSETISNYQDSRTIQLEDLGLGVQNCPARLALRAAGQVLKQQRENVTKLENEVKGKIEVAIKEIEEYRGQCLRNGSGYYDSFKKKQHRTDFDANLNRLKLAGWFDEIITMISKDELPDDLQCSEVWIRLGTHYRLLVEPLDIANYYRLGKNEDSGPYLRNARPRRYTILQKWLEENNVIQQQQPSPTGSDQPTMLTQDSCLWAHVEEIACLRLANNAGGHENSIAGLEKSLRPLIDSNGLSMEELVAGNSTFNSVVKWLWANMTPLQKSTSPISDVIGRHPELMN*

Protein Length: 295

Fln nts: AATTGAATGAGCTTTCAGAAATTCCTTTGTCGGAAACAATATCAAATTATCAAGACAGCAGGACAATACAACTGGAAGATCTTGGGCTTGGAGTTCAGAATTGCCCAGCAAGACTTGCCCTCAGAGCTGCGGGACAAGTTTTGAAGCAGCAGAGGGAGAACGTGACCAAATTGGAGAATGAAGTAAAAGGAAAGATAGAAGTGGCCATCAAAGAAATAGAAGAGTATCGTGGGCAGTGTCTCAGAAATGGCAGTGGTTACTACGACTCGTTCAAAAAGAAGCAACATAGAACAGACTTTGATGCTAACCTTAACAGGCTGAAGCTGGCAGGCTGGTTCGACGAAATCATAACGATGATCAGCAAGGATGAGTTACCGGACGATTTGCAGTGTAGTGAAGTGTGGATAAGACTGGGCACTCACTACAGGCTACTAGTTGAGCCACTGGACATCGCGAATTATTACAGGTTGGGAAAAAACGAAGACTCTGGGCCTTATCTCAGAAATGCCAGGCCTCGTCGTTATACAATTCTCCAAAAGTGGTTGGAAGAAAATAATGTGATTCAACAGCAGCAGCCATCCCCTACAGGCTCTGATCAGCCCACGATGCTCACTCAAGACTCCTGTCTCTGGGCTCATGTTGAAGAAATTGCATGTTTAAGGCTTGCTAATAATGCAGGGGGTCATGAAAACTCCATAGCAGGATTGGAAAAGTCACTGAGGCCTTTGATTGATTCCAATGGTTTGTCTATGGAAGAACTTGTGGCTGGCAACTCTACCTTCAACAGTGTGGTCAAGTGGCTGTGGGCAAACATGACTCCACTGCAGAAATCAACCTCTCCCATCTCCGATGTTATTGGCAGGCACCCAGAACTGATGAACTAA___TCATGTAGATGATGTGAGTAGCCATTGCACAAGTAGTACATATTAGAGTAGTCTTGCTGTTTCTGTTGCTTTCTATACATTAGAACAAAGGTATTTCTCTTCACAATATCTTAAAGTTAAGATCAGCATTCACTCACATATATATAATGAGTGATGAGTACTGATTTGAAAGGGATGAAATGGTTTAATGGTTTTTATAAGTACTTATTTGAGTAGTCTGGTTATTTCAGTTGCATTATGTACACAAGGACTAAGATATATCTCCACACTCTGTTGATGCTAAGATCAGGGCTCATTCACATGTATATAATGAGTAGTACTGGTTTAGAATATTGTTGTATTTCTGTTGCCAATATATACAAGGAGTAAAGTTG

Fln Alignment:

Contig21178___LNELSEIPLSETISNYQDSRTIQLEDLGLGVQNCPARLALRAAGQVLKQQRENVTKLENEVKGKIEVAIKEIEEYRGQCLRNGSGYYDSFKKKQHRTDFDANLNRLKLAGWFDEIITMISKDELPDDLQCSEVWIRLGTHYRLLVEPLDIANYYRLGKNEDSGPYLRNARPRRYTILQKWLEENNVIQQQQPSPTGSDQPTMLTQDSCLWAHVEEIACLRLANNAGGHENSIAGLEKSLRPLIDSNGLSMEELVAG--NSTFNSVVKWLWANMTPLQKSTSPISDVIGRHPELMN
A9NVM4_______________LNELSDLPLSEAGSNYQDSRTAQLEALGLGIQNCPARLSLRAAGQVLKQQRENVPKLENEVRGKIETAINEIEEYRRQCFRNGIGYYDSFKNKQNRSDFDANLNRLKLAGWWDEIIPMVDKDELPEDFQCSEEWITLGTHYRLLVEPLDIANYYRLGKNEDSGPYLKNGRPRRYTTLQKWLKEIEVTKQLQPSPTGIDQPTVLTQDSCLWAHVEEIACLMRPNNVRDQENLVAELENSVKALIGSNGLSMEELVAGNCNSTFNTVVKWLWTNMNAEKKASSPISYIIGRHPELIN

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
582		80		20	0.995493
630			28	71	1.0
675	16		83		0.994512
1095			90	10	0.90298
1097			90	10	0.90298
1098	10			90	0.90298
1211	50			16	1.0

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain