SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene21117

Length: 1774 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene21117

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Nodulin MtN21 /EamA-like transporter family protein [Arabidopsis thaliana] dbj\|BAB09073.1\| nodulin-like protein [Arabidopsis thaliana] gb\|AED95523.1\| Nodulin MtN21 /EamA-like transporter family protein [Arabidopsis thaliana]	-	-	0.0	35%
FL-Next	tr=Uncharacterized protein; Oryza glaberrima (African rice).	-	-	0.0	38%
Sma3	Os06g0105700 protein	-	-	9.747e-06	-

Source	Gene names
Sma3	Os06g0105700; OsI_21301; OsJ_19830; P0644B06.28; POPTRDRAFT_816039;

Source	GOs	Term	Type	e value	Identity
Sma3	membrane	GO:0016020	Cellular Component	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Drug/metabolite transporter	IPR000620	-	-
Sma3	SANT/Myb domain	IPR001005	-	-
Sma3	Myb DNA-binding domain, plants	IPR006447	-	-
Sma3		IPR014778	-	-
Sma3	SANT domain	IPR017884	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: I1NWI8

Fln msg:

Fln protein: MYSGKRSFCSLEVLGIYASLLGMQISYAVNGVLIGKELSKGLNPLAFIVYSNAVGVLVLTPFALFLEKRKRPATVSLPLFGQFFLLSLGSVCAFQAFMLMGLKDTSPAFASAMPNLVPAIIFVMAWALGMEKVDITCVRSRSKIVGTLVCVSGAMATSFLRGPALSQLWRSHSVSVSDPNALHPMENILVGFVREENGDPGKQIKGCIYLVSAVTILSAALILQAETVKKYPAPLSQTSITAILGSIQTAVLITVLDRGMKPTSWVLDRSGIFTFVFAGISCNGLGLALQLWCMQKRGPVFVTIFNPVSTVFSAILSSLFLGDTLHLGSMMGVLLIFAGLYLVLWGKSQDSVNHIKISSQKEEDLHTAEEEKHEHPSSSQVLDVKIPLLR*

Protein Length: 392

Fln nts: ATGGGGGAATGCAAAAGGTCTGTTGATGCATGATATCTTCACAAGGTTGTATAGGGGTTAACTGTTTTAGGAGTCCAAGCTTATCAGTATTGCTGTGCTGCAGCTAGTAGGAATATCAGCCCTTAAAATCCTTCATTCCGGGATCTAGACTTGCAGGGAGTTAGATTCTAACCTTTGGAAGAGCCAATCCAAA_-_ATGTACAGTGGCAAACGCTCTTTCTGCAGTCTGGAAGTGTTGGGCATCTATGCGTCCTTGCTGGGTATGCAGATTAGTTATGCAGTGAACGGTGTTCTTATTGGGAAGGAATTATCAAAGGGGCTGAACCCTCTGGCTTTCATTGTTTATTCCAACGCGGTGGGGGTACTAGTGCTTACACCATTTGCCCTCTTTCTTGAAAAGAGGAAGCGGCCAGCAACTGTGAGTTTACCTCTGTTTGGACAGTTCTTTCTGCTGTCTCTTGGGAGTGTCTGTGCATTTCAAGCATTCATGCTTATGGGGTTAAAGGATACGTCCCCTGCCTTCGCTTCCGCAATGCCCAACTTGGTTCCCGCCATTATTTTCGTTATGGCATGGGCTTTGGGCATGGAGAAAGTAGACATTACGTGCGTTCGCAGCAGATCCAAAATTGTGGGAACTCTGGTTTGTGTGAGTGGGGCAATGGCAACGAGTTTCCTTCGTGGTCCTGCTCTAAGTCAACTCTGGCGTTCACATTCAGTTTCTGTCTCTGACCCTAATGCACTGCACCCAATGGAAAATATTCTGGTTGGTTTTGTTCGTGAAGAAAATGGAGATCCGGGCAAACAGATTAAAGGGTGTATTTATCTTGTCTCAGCAGTGACTATTTTATCCGCTGCCTTGATTCTGCAGGCTGAGACAGTGAAGAAGTATCCAGCCCCATTATCCCAAACATCGATTACTGCCATTCTAGGGTCCATTCAAACTGCTGTCCTAATAACGGTTCTGGACAGAGGAATGAAGCCAACATCATGGGTACTAGATAGGAGCGGGATCTTCACTTTTGTCTTTGCAGGAATCAGCTGCAATGGACTCGGACTTGCATTGCAATTGTGGTGTATGCAGAAACGAGGGCCTGTATTCGTTACAATATTCAACCCAGTGTCTACCGTCTTCTCGGCAATCTTATCATCTTTGTTTCTGGGAGACACATTGCATCTAGGAAGTATGATGGGTGTACTACTTATATTCGCTGGTCTCTACCTTGTTCTATGGGGCAAATCCCAAGACAGTGTTAACCACATCAAAATATCTTCACAGAAAGAAGAGGATCTACACACCGCAGAAGAAGAAAAACATGAGCATCCTTCTTCTTCCCAGGTATTGGATGTGAAAATACCTCTGCTACGCTGA___CCACTACCAATCTCCAAATGAGGGCTTTTATGTATAGTTGTAATGTCACTGACCAAAAATATAGTCCAGTGGATATGTAAGACTTGGTTTGATCTTTTGGTTCTGTAGACAACAGTCCAGTGGATATGTAAGACCTGGTTTGATCTTTTAGTTCTGTACACAACACACTTGTTTGACCTCTTGGTTAAGGATTCATACATCTGCGTGGAAGAGATTGCTGTCTCTCAGAAAGTTTGGCTCTTTTTGACACACTTTTAATGAACAAATAGTAACATAACTGCATAGAACTGGGTTGAGATATTGCTTATACGTAATAATCTTGACTTTTACAGAACATTTTAAACACTTGTTAACTGTGCAAAGCTTGAAAACTCAAATAGCTCAATAATCTCATCAGGAAAGTGTTAC

Fln Alignment:

Contig21117___GKRSFCSLEVLGIYASLLGMQISYAVNGVLIGKELSKGLNPLAFIVYSNAVGVLVLTPFALFLEKRKRPATVXXXXXXXXXXXXXXXVCAFQAFMLMGLKDTSPAFASAMPNLVPAIIFVMAWALGMEKVDITCVRSRSKIVGTLVCVSGAMATSFLRGPALSQLWRSHSVSVSDPNALHPMENILVGFVREENGDPGKQIKGCIYLVSAVTILSAALILQAETVKKYPAPLSQTSITAILGSIQTAVLITVLDRGMKPTSWVLDRSG--IFTFVFAGISCNGLGLALQLWCMQKRGPVFVTIFNPVSTVFSAILSSLFLGDTLHLGSMMGVLLIFAGLYLVLWGKSQDSVNHIKISSQKEEDLHTAEEEKHEHPSSSQVLD--VKIPLL
I1NWI8_______________GRKAAASGGGARLHVAMLALQLGYAGFHVVSRLALDMGVSKLVFPVYRNLIALFLLAPFAYFLEKKERPA-MTASLAVQFFFLALCGITANQGFYLLGLENTSPTFASAIQNSVPAITFAMAAALRIERVRLSSRDGLAKVAGTLLCVAGASVITLFKGPAIFNTHHNHQ----------PQPQQLAFAVAAGNNS---WTLGCVFLLGHCVSWSGWLVLQAPVLKRYPARLSVTSYTCFFGLIQFLAIAAFLERDA--AAWAV-RSGSELFTILYAGFVASGVAFAVQTWCIHRGGPVFVAVYQPVQTLLVAVMASLLLGEQFHLGGIIGAVLIVAGLYLVLWGKSQERA----IAAAKEASAAAAIADHHQQPASAAAADSCLKQPLL

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
729		50	50		1.0
735	16		83		0.994512
738		83		16	0.994512
933	75		25		0.996473
936		50	50		1.0
1310	73		5		1.0
1489	83		16		1.0
1527	11		88		0.999937
1579	89		10		0.999919

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain