SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene21064

Length: 1135 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene21064

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Disease resistance associated protein (Fragment) n=8 Tax=Pinaceae RepID=Q2VWL9_PICAB	-	-	0.0	90%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	90%
Sma3	Nbs-lrr resistance protein	-	-	1.622e-08	-

Source	Gene names
Sma3	At4g33300; At5g04720; F17M5.60; GSVIVT00014747001; LOC_Os12g39620; LRR1; MUK11.4; Os12g0586000; OsI_38915; OsJ_36681; POPTRDRAFT_563015; POPTRDRAFT_710696; POPTRDRAFT_764587; POPTRDRAFT_826770; RGC-CC_1; T1E3.80; VITISV_006255;

Source	GOs	Term	Type	Identity
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	nucleoside-triphosphatase activity	GO:0017111	Molecular Function	-
Sma3	apoptotic process	GO:0006915	Biological Process	-
Sma3	defense response	GO:0006952	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Powdery mildew resistance protein, RPW8 domain	IPR008808	-	-
Sma3		IPR014011	-	-
Sma3	Leucine-rich repeat-containing protein 40	IPR015766	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G33300.1	ADR1-L1 ADR1-like 1 chr4:16051162-16054005 REVERSE LENGTH=816	45%
RefSeq	Arabidopsis thaliana	NP_195056.2	putative disease resistance protein ADR1-like 1 [Arabidopsis thaliana]	45%
RefSeq	Populus trichocarpa	XP_002327103.1	nbs-lrr resistance protein [Populus trichocarpa]	46%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKC3

Fln msg: your sequence is shorter than subject: 230 - 835

Fln protein: KRATVNGLPSPSSLPQLKTIRLERLNVPSLQEQSKLFRNLEKLSLSLCEGLGNMSRFNTTQSSLKLPIMLDFNLDHCCDLDELPSDICDMSSVVNWSITNCHLLQKLPDDMEKLSSLRMLRLSACLGLKELPASIEKLGKLEYLDISLCECLKELPEEIGQLKKLQVLDMRECSRLRKLPKSVEGMKSLRHVICDEKIGQQWLRVKSSVLNELKVEIVDAHFSLDWLDG*

Protein Length: 231

Fln nts: GAAGAGAGCCACAGTAAACGGATTACCGTCGCCATCTTCTCTCCCGCAGCTTAAGACCATTCGCTTGGAGAGGTTGAATGTGCCCTCACTTCAAGAGCAGAGCAAACTCTTTCGGAACTTAGAAAAACTCTCGTTGAGCTTATGTGAAGGACTTGGAAATATGTCGAGGTTTAACACCACCCAGTCGAGCCTAAAGCTTCCCATAATGCTAGATTTTAACTTGGACCACTGCTGTGATTTGGACGAGTTGCCCTCTGATATTTGCGACATGTCTTCAGTGGTAAACTGGTCTATCACCAACTGTCACCTTCTTCAAAAGTTACCTGATGACATGGAAAAGCTTAGCTCTTTAAGAATGTTAAGGCTATCTGCATGTCTAGGCTTGAAAGAGCTACCAGCGTCCATTGAAAAACTTGGGAAGCTTGAATATCTGGACATTTCGCTGTGTGAGTGCTTAAAGGAACTTCCCGAGGAAATAGGACAACTAAAGAAACTCCAAGTACTTGACATGAGAGAGTGCTCTCGTTTGAGGAAGCTGCCTAAATCAGTGGAAGGCATGAAATCTCTGAGGCATGTTATCTGCGATGAGAAGATTGGGCAGCAATGGTTGCGTGTCAAGAGCTCTGTTCTCAACGAGCTTAAAGTTGAAATTGTGGATGCACATTTCAGCTTGGATTGGCTCGATGGTTGA___TATACAACCCAGACAGGATGCAGGTGCATCTAGACTGCAATTCACCTGCATTCATGACGAGGACATAGTGCGGTCAATACCATTTACGATACTAGCATTTGCTGAAGGTCCAACTTGGTGTTATCCATGCGTGTAGTAGCTGATTCTCTGCGGGGGACGGTAACATTATGGAAGACATTTTGAATCTTTACTGGTGTGTTTATGTTTTTATGTCGTCTGTGTGTGTGTGCGCACTTTATTTTGAATAAGGACACTTTATTTTAAGAAAATAGAATTATGCCACGTAGGTTTGACGTATGTGTGGAGTCATAGGTATTGGGAAGTTACCAAACTTATTAGAAGTCCTTGGCGCCCGTGAATGTAAATGGTGATTTCCCTTACAATGTCTTGGTTTATATGGCATGTAATGACAGTATGTTATATGCAATGACACTAGTAGAGTTT

Fln Alignment:

Contig21064___KRATVNGLPSPSSLPQLKTIRLERLNVPSLQEQSKLFRNLEKLSLSLCEGLGNMSRFNTTQSSLKLPIMLDFNLDHCCDLDELPSDICDMSSVVNWSITNCHLLQKLPDDMEKLSSLRMLRLSACLGLKELPASIEKLGKLEYLDISLCECLKELPEEIGQLKKLQVLDMRECSRLRKLPKSVEGMKSLRHVICDEKIGQQWLRVKSSVLNELKVEIVDAHFSLDWLDG
B8LKC3_______________KRATVNGLPAPSSLTQLRTIRLERLNVPSLQEHSRAFQSLEKLSLSLCEGLGNMSRFNSTQSSLKLPIMLDFNLDHCCDLEELPPGICDMSSVENWSITNCHLLQKLPDDMGKLCSLRMLRLSACLGLKELPDSIGKLGKLEYLDISLCECLKELPEEIGQLKKLQVLDMRECSRLRKLPKSVEGLKSLKHVICDEKIGQQWLRVKSSVLKELRVEIVDAHFSLDWLDG

SNPs (tot: 5)

Position	A %	G %	T %	Probability
834		25	75	1.0
923		44	11	1.0
960	50		50	1.0
1053	14	85		0.993533
1056	83	16		0.994512

SSRs (tot: 1)

Start position	End position	Sequence	Length
909	920	TG TG TG TG TG TG	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain