SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene21059

Length: 1173 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene21059 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Short chain alcohol dehydrogenase, putative n=1 Tax=Ricinus communis RepID=B9T6C0_RICCO	-	-	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	81%
Sma3	Tasselseed2-like short-chain dehydrogenase/reductase	-	-	-

Source	ECs	Term	Type	e value	Identity
Sma3		EC:1.1.1.10-	-	2.157e-10	-
Sma3	3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase.	EC:1.1.1.53	-	1.797e-27	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Steroid hormone biosynthesis	00140		1.797e-27	%
Sma3	Metabolic pathways	01100		1.797e-27	%

Source	Gene names
Sma3	3bhsd; ABA2; ADH; AT4g03140; At1g52340; At2g47130; At2g47140; At3g26760; At3g26770; At3g51680; CTA; CTS2; F19K6.3; F4C21.6; GIN1; GSVIVT00005501001; GSVIVT00021537001; GSVIVT00021538001; GSVIVT00021540001; GSVIVT00021542001; GSVIVT00021544001; GSVIVT00021

Source	GOs	Term	Type	Identity
Sma3	cytosol	GO:0005829	Cellular Component	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	copper ion binding	GO:0005507	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	xanthoxin dehydrogenase activity	GO:0010301	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	transferase activity	GO:0016740	Molecular Function	-
Sma3	testosterone dehydrogenase [NAD(P)] activity	GO:0030283	Molecular Function	-
Sma3	proline biosynthetic process	GO:0006561	Biological Process	-
Sma3	immune response	GO:0006955	Biological Process	-
Sma3	multicellular organismal development	GO:0007275	Biological Process	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	response to heat	GO:0009408	Biological Process	-
Sma3	response to water deprivation	GO:0009414	Biological Process	-
Sma3	regulation of abscisic acid biosynthetic process	GO:0010115	Biological Process	-
Sma3	sugar mediated signaling pathway	GO:0010182	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Glucose/ribitol dehydrogenase	IPR002347	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	2-5-oligoadenylate synthetase, N-terminal	IPR006116	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G51680.1	NAD(P)-binding Rossmann-fold superfamily protein chr3:19173622-19174667 REVERSE LENGTH=303	52%
RefSeq	Arabidopsis thaliana	NP_190736.1	Rossmann-fold NAD(P)-binding domain-containing protein [Arabidopsis thaliana]	52%
RefSeq	Populus trichocarpa	XP_002323034.1	predicted protein [Populus trichocarpa]	52%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NZX6

Fln msg: your sequence is longer than subject: 322 - 290

Fln protein: MGISVFLHLLIPQISFPTMANEQAEAFGACDDGNLNIHPEPRLNGKVAIITGGATGIGEAIVRLFTKHGAKVIITDIADEVGSKLADSLSPRATYVHCDVSKEEEVRAAVDLAMEKHGQLDMMYNNAGIIIASKSAAEYDMEEFDRVMRVNVRGVMLGIKHAARVMIPRKKGCIISTASIASIAGGFAPYCYTASKHAVIGMTKNGAAELGKYGIRVNAVSPSGLATPLSIQYFKEGDATSSVSEMETLKLAVEAFCSSIANLDGTILTVEDVAKAGLYLASDEAKYVSGHNLVVDGEAPLLITRGQPIADTLMVFVNKVS*

Protein Length: 323

Fln nts: CTCCCTGT_-_ATGGGGATATCAGTCTTCCTGCATCTTCTAATTCCTCAAATCTCATTCCCAACCATGGCTAATGAACAGGCTGAAGCATTTGGTGCCTGTGATGATGGCAATCTCAACATCCATCCAGAGCCACGATTGAACGGCAAGGTTGCAATAATAACGGGCGGGGCAACGGGTATTGGTGAAGCCATTGTTCGGCTCTTCACAAAGCACGGAGCCAAAGTCATAATCACAGACATTGCAGATGAAGTTGGGAGCAAGCTGGCCGATTCTCTTTCCCCTCGGGCAACTTACGTTCATTGCGATGTGAGCAAAGAGGAAGAGGTGAGGGCAGCGGTGGATTTGGCCATGGAGAAGCACGGGCAGCTCGACATGATGTATAACAACGCAGGAATAATCATTGCAAGCAAAAGCGCAGCAGAGTATGACATGGAAGAATTCGATCGAGTAATGAGGGTAAACGTGAGAGGAGTGATGCTAGGCATTAAGCACGCTGCCCGAGTGATGATCCCGCGGAAGAAGGGCTGCATAATTTCTACTGCTAGCATTGCAAGTATTGCAGGAGGATTTGCTCCATACTGCTACACAGCCTCCAAGCATGCAGTAATAGGGATGACCAAGAATGGCGCAGCTGAGCTGGGCAAATATGGGATCCGAGTCAACGCTGTGTCTCCTTCTGGATTGGCCACACCTCTGTCAATTCAGTACTTCAAGGAAGGCGATGCCACCTCATCTGTTTCAGAAATGGAGACTCTTAAGCTGGCTGTGGAAGCCTTCTGCAGCAGTATCGCCAACTTAGATGGAACGATTCTTACAGTGGAGGATGTTGCGAAGGCAGGTCTGTATTTGGCGAGTGATGAGGCTAAATATGTTAGCGGCCATAACCTTGTTGTGGATGGCGAAGCACCGTTGTTAATCACTCGTGGACAACCTATCGCTGATACTTTAATGGTATTTGTCAATAAGGTTAGCTAA___CAGGCAGGAGAACCTACCGCCAATACTTCGATAGTATTTGTCAATAAAGTTAGCTGACAGTTGTAGTTCTGCTCGCTGTATTCTTTTCCTTAGGATTTTTGTATTAGGTTCGCTCACTATTTTTCTGCTTTTTAGGTTGAAATCGCCTTCGTTGGGATGTGTGATTCCTCAACTTTCAAGGTGTGACATCTCTTACATT

Fln Alignment:

Contig21059___MANEQAEAFGACDDGNLNIHPEPRLNGKVXXXXXXXXXXXXXIVRLFTKHGAKVIITDIADEVGSKLADSLSPRATYVHCDVSKEEEVRAAVDLAMEKHGQLDMMYNNAGIIIASKSAAEYDMEEFDRVMRVNVRGVMLGIKHAARVMIPRKKGCXXXXXXXXXXAGGFAPYCYTASKHAVIGMTKNGAAELGKYGIRVNAVSPSGLATPLSIQYFKEGDATSSVSEMETLKLAVEAFCSSIANLDGTILTVEDVAKAGLYLASDEAKYVSGHNLVVDG
A9NZX6_______________MTSQEADASGTCV-GNLNTHADRRLNGKVAIITGGASGIGEAIVRLFTKHGAKVIIADIADEAGRNLAGSLSPPATYVHCDVSKEQDVRAAVDLAMEKHGQLDIMYNNAGIIVAGKSVAEYDMEQFDRVMRVNVRGVMLGIKHAARVMIPRKKGCIISTASIAGIVGGFAPYSYTVSKHAVIGLTKNGAAELGKYGIRVNAVSPYGSATPLAVEYLKQGDASSSASEVDN-KAAVEAFCSSVANLEGTIHKVEDIAEAGLYLASDEAKYVSGHNLVVDG

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
712	66	33			0.997452
714		33	66		0.997452
715	33			66	0.997452
855		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain